miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26569 5' -59.5 NC_005357.1 + 29167 0.69 0.270296
Target:  5'- gACGCCAAGGAuggcaacuGGcugGCGCUACuGCCgaaggaaaCGCa -3'
miRNA:   3'- -UGCGGUUCCU--------UCa--CGCGGUG-CGG--------GCG- -5'
26569 5' -59.5 NC_005357.1 + 33530 0.69 0.250413
Target:  5'- cGCGCCGccGAua-GCGCCAUucacaaugauGCCCGCg -3'
miRNA:   3'- -UGCGGUucCUucaCGCGGUG----------CGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 18889 0.7 0.213153
Target:  5'- -gGCCGAGGccaucgaccgcGUGCGCCgccuggaaggcGCGCUCGCg -3'
miRNA:   3'- ugCGGUUCCuu---------CACGCGG-----------UGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 15884 0.73 0.13919
Target:  5'- cACGuUCAAGGAGGgcgGCGCCAUGCugaaaaCCGUg -3'
miRNA:   3'- -UGC-GGUUCCUUCa--CGCGGUGCG------GGCG- -5'
26569 5' -59.5 NC_005357.1 + 22547 0.67 0.35402
Target:  5'- -gGCCAAGaAGGcGCGCgACGCCUucgGCa -3'
miRNA:   3'- ugCGGUUCcUUCaCGCGgUGCGGG---CG- -5'
26569 5' -59.5 NC_005357.1 + 40378 0.68 0.321588
Target:  5'- gACcCCGAGGAAuuGcGCGCCGuguucuauCGCCUGCg -3'
miRNA:   3'- -UGcGGUUCCUU--CaCGCGGU--------GCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 8173 0.7 0.244059
Target:  5'- -gGCCcAGGAAGgcgcugGCGUCcUGCCCGUu -3'
miRNA:   3'- ugCGGuUCCUUCa-----CGCGGuGCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 8686 0.74 0.117855
Target:  5'- uGCGCCGcccAGGu-GUGCGCCGCGCagauUGCu -3'
miRNA:   3'- -UGCGGU---UCCuuCACGCGGUGCGg---GCG- -5'
26569 5' -59.5 NC_005357.1 + 40916 0.68 0.306225
Target:  5'- gGCGCgaaUAAGGGg--GCGCCAUGUCCGa -3'
miRNA:   3'- -UGCG---GUUCCUucaCGCGGUGCGGGCg -5'
26569 5' -59.5 NC_005357.1 + 33214 0.76 0.081678
Target:  5'- cGCGCCGcaGAAcGUGCGCCGCGCCgccgaGCa -3'
miRNA:   3'- -UGCGGUucCUU-CACGCGGUGCGGg----CG- -5'
26569 5' -59.5 NC_005357.1 + 33752 0.69 0.250413
Target:  5'- aACGCCGAGGugcGcGCGgCACGCaaugccgaCCGCg -3'
miRNA:   3'- -UGCGGUUCCuu-CaCGCgGUGCG--------GGCG- -5'
26569 5' -59.5 NC_005357.1 + 35200 0.69 0.270296
Target:  5'- uCGCCGAGGguGaGCGCgGCGCagaUGCu -3'
miRNA:   3'- uGCGGUUCCuuCaCGCGgUGCGg--GCG- -5'
26569 5' -59.5 NC_005357.1 + 34273 0.7 0.237839
Target:  5'- cACGCgCAGGGAcgcaGCGCCgACaCCCGCa -3'
miRNA:   3'- -UGCG-GUUCCUuca-CGCGG-UGcGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 357 0.7 0.214277
Target:  5'- uCGCCGAccauccGGGUGUGCUugGCCUGCc -3'
miRNA:   3'- uGCGGUUcc----UUCACGCGGugCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 12547 0.71 0.187669
Target:  5'- cAUGCCGGGGggGgugGUGCUAgaccCGUUCGCa -3'
miRNA:   3'- -UGCGGUUCCuuCa--CGCGGU----GCGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 5753 0.73 0.144654
Target:  5'- cGCGCCGGGcagcGAGUGCGCCAgggccuugaccaucgUGuCCCGCc -3'
miRNA:   3'- -UGCGGUUCc---UUCACGCGGU---------------GC-GGGCG- -5'
26569 5' -59.5 NC_005357.1 + 14229 0.66 0.388694
Target:  5'- -gGCCGAccuGGAcaAG-GCGCCGCaCCUGCu -3'
miRNA:   3'- ugCGGUU---CCU--UCaCGCGGUGcGGGCG- -5'
26569 5' -59.5 NC_005357.1 + 5808 0.67 0.35402
Target:  5'- aGCGCCAGcGGAuagucgggcauGGcGUGCCGCaGCaCCGUg -3'
miRNA:   3'- -UGCGGUU-CCU-----------UCaCGCGGUG-CG-GGCG- -5'
26569 5' -59.5 NC_005357.1 + 590 0.67 0.3457
Target:  5'- cUGCuCGGGGuAGUGCuucGCCAUGUCgGCg -3'
miRNA:   3'- uGCG-GUUCCuUCACG---CGGUGCGGgCG- -5'
26569 5' -59.5 NC_005357.1 + 18480 0.68 0.326308
Target:  5'- aAUGCCGAccucgccGGgcGUGCGCCugaccaucacgccuAUGCCgGCa -3'
miRNA:   3'- -UGCGGUU-------CCuuCACGCGG--------------UGCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.