Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2657 | 3' | -55.1 | NC_001491.2 | + | 33789 | 0.66 | 0.941265 |
Target: 5'- uCCUCGgGGAcucUG-ACCCUACCCa--- -3' miRNA: 3'- cGGAGCgUCU---ACuUGGGAUGGGagcc -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 111315 | 0.66 | 0.936534 |
Target: 5'- cCCUCGCAcuguauUGAACCC--CCCUCa- -3' miRNA: 3'- cGGAGCGUcu----ACUUGGGauGGGAGcc -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 33325 | 0.66 | 0.936534 |
Target: 5'- cGCCUaCGCGGAcauGgCCUACCCgagagacgaggCGGg -3' miRNA: 3'- -CGGA-GCGUCUacuUgGGAUGGGa----------GCC- -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 147712 | 0.66 | 0.936534 |
Target: 5'- gGCCUgGCAGGguccGGCCCgcgucagcCCCUaCGGg -3' miRNA: 3'- -CGGAgCGUCUac--UUGGGau------GGGA-GCC- -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 133018 | 0.66 | 0.936534 |
Target: 5'- -aCUCGCGGAgUGGGCCCgcGCCagcaaauagauUUCGGa -3' miRNA: 3'- cgGAGCGUCU-ACUUGGGa-UGG-----------GAGCC- -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 10537 | 0.66 | 0.936534 |
Target: 5'- cGCC-CGCGGccGcaagcuCCCUcuccagcuGCCCUCGGc -3' miRNA: 3'- -CGGaGCGUCuaCuu----GGGA--------UGGGAGCC- -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 145291 | 0.66 | 0.931566 |
Target: 5'- --aUCGUcgGGA--AGCCCUACCCUCGc -3' miRNA: 3'- cggAGCG--UCUacUUGGGAUGGGAGCc -5' |
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2657 | 3' | -55.1 | NC_001491.2 | + | 51306 | 0.66 | 0.950027 |
Target: 5'- cGCCUuCGCGGcucUGccGGCCCcGCUCUUGGc -3' miRNA: 3'- -CGGA-GCGUCu--AC--UUGGGaUGGGAGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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