miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2657 5' -48.3 NC_001491.2 + 7780 0.66 0.999404
Target:  5'- -cCGAGACGGgGGGUgggggcGUgGAACGg -3'
miRNA:   3'- guGUUUUGCCgCCCAaga---CAgUUUGC- -5'
2657 5' -48.3 NC_001491.2 + 105117 0.66 0.999246
Target:  5'- cCGCAGAuuuggccggggccGCGGCGGGg---GUCucuACGg -3'
miRNA:   3'- -GUGUUU-------------UGCCGCCCaagaCAGuu-UGC- -5'
2657 5' -48.3 NC_001491.2 + 57386 0.66 0.999091
Target:  5'- uCGCGu--CGGC-GGUUUUGUUGAACGc -3'
miRNA:   3'- -GUGUuuuGCCGcCCAAGACAGUUUGC- -5'
2657 5' -48.3 NC_001491.2 + 142661 0.67 0.998888
Target:  5'- uCACGAGGCGGUGGaagcGUUUguUGUC-GACGu -3'
miRNA:   3'- -GUGUUUUGCCGCC----CAAG--ACAGuUUGC- -5'
2657 5' -48.3 NC_001491.2 + 14302 0.67 0.998647
Target:  5'- cUACAAAcugguAUGGUGGGagCUGUgGAGCu -3'
miRNA:   3'- -GUGUUU-----UGCCGCCCaaGACAgUUUGc -5'
2657 5' -48.3 NC_001491.2 + 21525 0.68 0.997193
Target:  5'- uCGCAGGugGGCaacuucGGggCUGUUAGACu -3'
miRNA:   3'- -GUGUUUugCCGc-----CCaaGACAGUUUGc -5'
2657 5' -48.3 NC_001491.2 + 116841 0.68 0.996675
Target:  5'- aGCGAGACGcaccgccgcgcGUGGGUUUgugagUGUCAGGCa -3'
miRNA:   3'- gUGUUUUGC-----------CGCCCAAG-----ACAGUUUGc -5'
2657 5' -48.3 NC_001491.2 + 95621 0.69 0.992771
Target:  5'- gGCGGcAGCGGCGGGggaugGUgGGGCGg -3'
miRNA:   3'- gUGUU-UUGCCGCCCaaga-CAgUUUGC- -5'
2657 5' -48.3 NC_001491.2 + 85125 0.69 0.992771
Target:  5'- cCACGGGGCGGUGGGcg-UGUCGGGa- -3'
miRNA:   3'- -GUGUUUUGCCGCCCaagACAGUUUgc -5'
2657 5' -48.3 NC_001491.2 + 137737 0.73 0.924953
Target:  5'- uCGCAAGACGGCGcGGUaugcCUGgCAGGCa -3'
miRNA:   3'- -GUGUUUUGCCGC-CCAa---GACaGUUUGc -5'
2657 5' -48.3 NC_001491.2 + 91579 1.09 0.015798
Target:  5'- aCACAAAACGGCGGGUUCUGUCAAACGc -3'
miRNA:   3'- -GUGUUUUGCCGCCCAAGACAGUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.