miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26570 3' -53.5 NC_005357.1 + 27460 0.66 0.744123
Target:  5'- ----cGCuGGUaugCCAgcgcGCCGCGCACGc -3'
miRNA:   3'- gcuaaCG-CCAaa-GGUa---CGGCGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 3742 0.66 0.744123
Target:  5'- cCGGUgGUGGgcacgUCgGUGCCGcCGCugGa -3'
miRNA:   3'- -GCUAaCGCCaa---AGgUACGGC-GCGugU- -5'
26570 3' -53.5 NC_005357.1 + 16175 0.66 0.733255
Target:  5'- aGGccgGCGGgugcCCGUGCCuucggcgacGCGCGCAa -3'
miRNA:   3'- gCUaa-CGCCaaa-GGUACGG---------CGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 41877 0.66 0.733255
Target:  5'- uCGAggcGUGGuUUUUCAgcgGcCCGCGCACGu -3'
miRNA:   3'- -GCUaa-CGCC-AAAGGUa--C-GGCGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 21019 0.66 0.733255
Target:  5'- uGAacGUGGaguucgUUUCCAUGCuCGCGCAg- -3'
miRNA:   3'- gCUaaCGCC------AAAGGUACG-GCGCGUgu -5'
26570 3' -53.5 NC_005357.1 + 37075 0.66 0.725582
Target:  5'- gCGGUgcagGCGGccacgcagcgcgaugCCAUGCUGCGcCACGu -3'
miRNA:   3'- -GCUAa---CGCCaaa------------GGUACGGCGC-GUGU- -5'
26570 3' -53.5 NC_005357.1 + 18339 0.66 0.722277
Target:  5'- ----aGCGGggugcCCGUGCCcCGCGCGg -3'
miRNA:   3'- gcuaaCGCCaaa--GGUACGGcGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 23720 0.66 0.700048
Target:  5'- aGGUcGCGGg--CCAgUGCCucggugGCGCGCAg -3'
miRNA:   3'- gCUAaCGCCaaaGGU-ACGG------CGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 28267 0.67 0.666202
Target:  5'- -uGUUGCGca--CCAUGaCCGCGCGCu -3'
miRNA:   3'- gcUAACGCcaaaGGUAC-GGCGCGUGu -5'
26570 3' -53.5 NC_005357.1 + 40045 0.67 0.654836
Target:  5'- ----aGCGaccgCCAUGCCGUGCGCc -3'
miRNA:   3'- gcuaaCGCcaaaGGUACGGCGCGUGu -5'
26570 3' -53.5 NC_005357.1 + 26146 0.67 0.643447
Target:  5'- aCGAccG-GGUagccUUCCGggugGCCGCGCGCGa -3'
miRNA:   3'- -GCUaaCgCCA----AAGGUa---CGGCGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 23520 0.68 0.632048
Target:  5'- gCGAgcGCGccUUCCAgGCgGCGCACGc -3'
miRNA:   3'- -GCUaaCGCcaAAGGUaCGgCGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 31163 0.68 0.609259
Target:  5'- uGGUUGCcuugUCCGgugaagcacggGCCGCGCACGu -3'
miRNA:   3'- gCUAACGccaaAGGUa----------CGGCGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 18514 0.68 0.609259
Target:  5'- ---cUGCGGUcaUCCAUGCCgGUGUugGg -3'
miRNA:   3'- gcuaACGCCAa-AGGUACGG-CGCGugU- -5'
26570 3' -53.5 NC_005357.1 + 7978 0.69 0.564014
Target:  5'- ----cGCaucgGGUUUCCAUGUCGcCGCGCu -3'
miRNA:   3'- gcuaaCG----CCAAAGGUACGGC-GCGUGu -5'
26570 3' -53.5 NC_005357.1 + 1092 0.69 0.564014
Target:  5'- aGAUUGCcuuggCCGUGUCGCGCGgCAu -3'
miRNA:   3'- gCUAACGccaaaGGUACGGCGCGU-GU- -5'
26570 3' -53.5 NC_005357.1 + 3126 0.69 0.519704
Target:  5'- aGcgUGCGGUUUCUgaAUGCcCGCgagaaaGCGCAa -3'
miRNA:   3'- gCuaACGCCAAAGG--UACG-GCG------CGUGU- -5'
26570 3' -53.5 NC_005357.1 + 9242 0.69 0.519704
Target:  5'- ----aGCGGUggCCGUGCCGaggGCGCc -3'
miRNA:   3'- gcuaaCGCCAaaGGUACGGCg--CGUGu -5'
26570 3' -53.5 NC_005357.1 + 28548 0.7 0.49806
Target:  5'- aCGAccUUGCGGccgccggCCAUcGCgGCGCGCAc -3'
miRNA:   3'- -GCU--AACGCCaaa----GGUA-CGgCGCGUGU- -5'
26570 3' -53.5 NC_005357.1 + 11197 0.72 0.378237
Target:  5'- uGAUggUGCGGUca--AUGCCGCGCAUg -3'
miRNA:   3'- gCUA--ACGCCAaaggUACGGCGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.