Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26571 | 3' | -54.4 | NC_005357.1 | + | 13661 | 0.66 | 0.718574 |
Target: 5'- cGCGACGccgUGcGCGCCGagaaGCGcACCgcGCUGg -3' miRNA: 3'- -CGCUGUa--AC-UGCGGC----UGC-UGGa-CGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 20212 | 0.66 | 0.718574 |
Target: 5'- uUGGCA---GCGCCcGCGGCCgGCUGu -3' miRNA: 3'- cGCUGUaacUGCGGcUGCUGGaCGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 19155 | 0.66 | 0.718574 |
Target: 5'- cGUGGCGc--ACGCCGACaccgaccuGACCaUGCUGu -3' miRNA: 3'- -CGCUGUaacUGCGGCUG--------CUGG-ACGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 8785 | 0.66 | 0.717486 |
Target: 5'- cGCGGCGcacgaUGggucggccGCGCCGGucaguacCGAUCUGCUGg -3' miRNA: 3'- -CGCUGUa----AC--------UGCGGCU-------GCUGGACGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 14752 | 0.66 | 0.696642 |
Target: 5'- cGCGcaGCAUUGGCGCgcagcgugucggUGuCGAUCUGCUu -3' miRNA: 3'- -CGC--UGUAACUGCG------------GCuGCUGGACGAc -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 15146 | 0.66 | 0.696642 |
Target: 5'- gGCGGCGgauGCGCCcagGGCGACg-GCUGa -3' miRNA: 3'- -CGCUGUaacUGCGG---CUGCUGgaCGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 18456 | 0.66 | 0.685572 |
Target: 5'- cGUGACGgucgcGGCGCCGGCGGCgucgGCc- -3' miRNA: 3'- -CGCUGUaa---CUGCGGCUGCUGga--CGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 5255 | 0.66 | 0.685572 |
Target: 5'- uUGGCGUUGGCaCCGGCcACCgUGUUGa -3' miRNA: 3'- cGCUGUAACUGcGGCUGcUGG-ACGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 5119 | 0.66 | 0.685572 |
Target: 5'- uGCGGC--UGGCGCCGuuGAaCUGCa- -3' miRNA: 3'- -CGCUGuaACUGCGGCugCUgGACGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 2196 | 0.66 | 0.685572 |
Target: 5'- cCGAUAggGAUGCCGACGcCCUcGUc- -3' miRNA: 3'- cGCUGUaaCUGCGGCUGCuGGA-CGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 19214 | 0.66 | 0.678904 |
Target: 5'- cCGAgGccGAgGCCGAauucaccgacgaggcCGACCUGCUGc -3' miRNA: 3'- cGCUgUaaCUgCGGCU---------------GCUGGACGAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 9882 | 0.66 | 0.674449 |
Target: 5'- aGCGGCAU---CGCCGGCGGCa-GCa- -3' miRNA: 3'- -CGCUGUAacuGCGGCUGCUGgaCGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 15401 | 0.66 | 0.674449 |
Target: 5'- cCGGCGaaGAUGCCgGACGACCgaUGCa- -3' miRNA: 3'- cGCUGUaaCUGCGG-CUGCUGG--ACGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 37999 | 0.66 | 0.674449 |
Target: 5'- gGCGGCuucccccUGGCGCgGcACGAUCUGgUGa -3' miRNA: 3'- -CGCUGua-----ACUGCGgC-UGCUGGACgAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 28382 | 0.67 | 0.663284 |
Target: 5'- gGCGAgGUguuccaguucGACGCCGGCGGCgCgGCg- -3' miRNA: 3'- -CGCUgUAa---------CUGCGGCUGCUG-GaCGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 17372 | 0.67 | 0.663284 |
Target: 5'- uGCGACAgguaUGccugcaucGCGCCGACGcACC-GCUu -3' miRNA: 3'- -CGCUGUa---AC--------UGCGGCUGC-UGGaCGAc -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 33785 | 0.67 | 0.663284 |
Target: 5'- cGCG-CGaUGAagGCCGGCGACCUcGCc- -3' miRNA: 3'- -CGCuGUaACUg-CGGCUGCUGGA-CGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 27903 | 0.67 | 0.663284 |
Target: 5'- -------cGGCGCCGGCGACgUGgCUGa -3' miRNA: 3'- cgcuguaaCUGCGGCUGCUGgAC-GAC- -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 12022 | 0.67 | 0.65209 |
Target: 5'- cGCGGCc--GugGCCGGCGAgguCUUGCc- -3' miRNA: 3'- -CGCUGuaaCugCGGCUGCU---GGACGac -5' |
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26571 | 3' | -54.4 | NC_005357.1 | + | 21177 | 0.67 | 0.65209 |
Target: 5'- cGCGGCc----UGCUGcGCGGCCUGCUGc -3' miRNA: 3'- -CGCUGuaacuGCGGC-UGCUGGACGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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