Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26571 | 5' | -59 | NC_005357.1 | + | 10401 | 0.66 | 0.466001 |
Target: 5'- cGCCGGGuucaauGUCGUGGGcguccagcgugucgaGgguuucgcacaggacGCUGGCGUCg -3' miRNA: 3'- -CGGUCCuu----CAGCAUCC---------------C---------------CGACCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 7680 | 0.66 | 0.466001 |
Target: 5'- gGCCAGGucGUCGggcuugaccucGGcGGCcGGCuuGCCg -3' miRNA: 3'- -CGGUCCuuCAGCau---------CC-CCGaCCG--CGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 25334 | 0.66 | 0.462032 |
Target: 5'- cGCCGGGAuuguccaggccggccAGuUCGcaUAGccggccaccGGGCaGGCGCCa -3' miRNA: 3'- -CGGUCCU---------------UC-AGC--AUC---------CCCGaCCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 14991 | 0.66 | 0.448284 |
Target: 5'- cGCCAGGGccugcGGcCGccGGGcGCgGuGCGCCa -3' miRNA: 3'- -CGGUCCU-----UCaGCauCCC-CGaC-CGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 39577 | 0.66 | 0.438604 |
Target: 5'- aCCAGGccccUCGcuGGuGCUGGCGCCg -3' miRNA: 3'- cGGUCCuuc-AGCauCCcCGACCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 9594 | 0.67 | 0.4103 |
Target: 5'- gGCCAGGcgAAGcCGUuGcGGCUGGUGUa -3' miRNA: 3'- -CGGUCC--UUCaGCAuCcCCGACCGCGg -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 28985 | 0.67 | 0.389385 |
Target: 5'- aGCCAGGu-GUCGUAGuccucguuaucgacGuaGGCgaccaGGCGCCg -3' miRNA: 3'- -CGGUCCuuCAGCAUC--------------C--CCGa----CCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 6591 | 0.67 | 0.383159 |
Target: 5'- gGCCAGGggGcugcggucuUUGUcgaugaccAGcGGGCgcgUGGCGCUg -3' miRNA: 3'- -CGGUCCuuC---------AGCA--------UC-CCCG---ACCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 10330 | 0.67 | 0.373511 |
Target: 5'- gGCCAGGGcguugagcaacgcGGcCGUGuuggcGGGGCcgaugagcaUGGCGUCg -3' miRNA: 3'- -CGGUCCU-------------UCaGCAU-----CCCCG---------ACCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 13306 | 0.68 | 0.352204 |
Target: 5'- cGCCGGGGccggcGUUGUAGGcGGCguaggcuuucggcaGGuCGCCg -3' miRNA: 3'- -CGGUCCUu----CAGCAUCC-CCGa-------------CC-GCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 6659 | 0.68 | 0.348876 |
Target: 5'- uGCCGGGGAagccGUCGUAGuuGGCcuugaGGuCGCCa -3' miRNA: 3'- -CGGUCCUU----CAGCAUCc-CCGa----CC-GCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 8571 | 0.68 | 0.340654 |
Target: 5'- uCCuGGgcGUCGUAGGccgcgcgugcGGcCUGGUGCUg -3' miRNA: 3'- cGGuCCuuCAGCAUCC----------CC-GACCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 5101 | 0.68 | 0.340654 |
Target: 5'- gGCCGGcccAG-CGUccGGuGcGGCUGGCGCCg -3' miRNA: 3'- -CGGUCcu-UCaGCA--UC-C-CCGACCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 9984 | 0.68 | 0.324634 |
Target: 5'- -gUAGGggG-CGUAGGGGCagucGCuGCCg -3' miRNA: 3'- cgGUCCuuCaGCAUCCCCGac--CG-CGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 24121 | 0.69 | 0.309181 |
Target: 5'- cGCgUAGG-GGUCGUAGuccagccGGCUGcGCGCCu -3' miRNA: 3'- -CG-GUCCuUCAGCAUCc------CCGAC-CGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 2538 | 0.69 | 0.309181 |
Target: 5'- aCCAGGAAuUCGcggUAGGGGCc-GCGCUc -3' miRNA: 3'- cGGUCCUUcAGC---AUCCCCGacCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 7170 | 0.69 | 0.287065 |
Target: 5'- gGCCGGGcgcuuGUCGgauucGGGGGCgacgcugGGCuuGCCa -3' miRNA: 3'- -CGGUCCuu---CAGCa----UCCCCGa------CCG--CGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 3801 | 0.72 | 0.189772 |
Target: 5'- cGCCuGGAAuucGUUGUAGuuGGGCaGGCGCUu -3' miRNA: 3'- -CGGuCCUU---CAGCAUC--CCCGaCCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 4809 | 0.73 | 0.152919 |
Target: 5'- gGCCAGcuuguaGAGGUC---GGGGCcGGCGCCg -3' miRNA: 3'- -CGGUC------CUUCAGcauCCCCGaCCGCGG- -5' |
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26571 | 5' | -59 | NC_005357.1 | + | 9674 | 0.75 | 0.109727 |
Target: 5'- cGCCuucuuGGggGUCuucuugGUGGGGGCggucaUGGCGUCa -3' miRNA: 3'- -CGGu----CCuuCAG------CAUCCCCG-----ACCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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