miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26573 5' -54.9 NC_005357.1 + 20196 0.66 0.642151
Target:  5'- gUCGUcGCCCUCGGUCUUG-GCAGcgCc -3'
miRNA:   3'- gAGUA-CGGGAGCUGGAGCaCGUCaaG- -5'
26573 5' -54.9 NC_005357.1 + 7260 0.66 0.630841
Target:  5'- --gAUGUCgC-CGGCCUUGUGCAGcUUCu -3'
miRNA:   3'- gagUACGG-GaGCUGGAGCACGUC-AAG- -5'
26573 5' -54.9 NC_005357.1 + 23491 0.67 0.608234
Target:  5'- -cCGUGggaaUCUCGACCUgCG-GCAGUUCc -3'
miRNA:   3'- gaGUACg---GGAGCUGGA-GCaCGUCAAG- -5'
26573 5' -54.9 NC_005357.1 + 26455 0.67 0.574511
Target:  5'- --gAUGCgCUCGACCUCGgcauccGuCAGUUUg -3'
miRNA:   3'- gagUACGgGAGCUGGAGCa-----C-GUCAAG- -5'
26573 5' -54.9 NC_005357.1 + 7355 0.68 0.541236
Target:  5'- ----cGgCCUCGACCUCG-GCGucGUUCg -3'
miRNA:   3'- gaguaCgGGAGCUGGAGCaCGU--CAAG- -5'
26573 5' -54.9 NC_005357.1 + 18755 0.68 0.541236
Target:  5'- gUCcgGCCCgaccgagggUCG-CCUgGUGCAGUUg -3'
miRNA:   3'- gAGuaCGGG---------AGCuGGAgCACGUCAAg -5'
26573 5' -54.9 NC_005357.1 + 10760 0.7 0.426276
Target:  5'- ----cGCgCUCGACUUCGgcccGCAGUUCu -3'
miRNA:   3'- gaguaCGgGAGCUGGAGCa---CGUCAAG- -5'
26573 5' -54.9 NC_005357.1 + 32149 0.71 0.343802
Target:  5'- cCUCAagGCCgaaCUCGACCUUGccaaGCAGUUCc -3'
miRNA:   3'- -GAGUa-CGG---GAGCUGGAGCa---CGUCAAG- -5'
26573 5' -54.9 NC_005357.1 + 3094 0.71 0.338729
Target:  5'- aCUUGUGCUguCUCGACCUgaugcggcgucauagCGUGCGGUUUc -3'
miRNA:   3'- -GAGUACGG--GAGCUGGA---------------GCACGUCAAG- -5'
26573 5' -54.9 NC_005357.1 + 28336 0.71 0.335377
Target:  5'- aCUCgAUGgCCUUGGCCUCGUcggGCAGcgCg -3'
miRNA:   3'- -GAG-UACgGGAGCUGGAGCA---CGUCaaG- -5'
26573 5' -54.9 NC_005357.1 + 21572 0.75 0.198187
Target:  5'- cCUCGUGCCgCUCGGCCacuUCGgugGCGGUcaUCu -3'
miRNA:   3'- -GAGUACGG-GAGCUGG---AGCa--CGUCA--AG- -5'
26573 5' -54.9 NC_005357.1 + 26425 1.11 0.000533
Target:  5'- aCUCAUGCCCUCGACCUCGUGCAGUUCg -3'
miRNA:   3'- -GAGUACGGGAGCUGGAGCACGUCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.