Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26574 | 3' | -50.9 | NC_005357.1 | + | 15125 | 0.66 | 0.879038 |
Target: 5'- gUGGGCGUCGugGgaaGCCuuCGCcaag-GCg -3' miRNA: 3'- -ACCCGUAGCugCa--UGG--GCGauuuaUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 18099 | 0.66 | 0.879038 |
Target: 5'- cGGGCAUCGcucugcCGccugACCCGCggc-UGCu -3' miRNA: 3'- aCCCGUAGCu-----GCa---UGGGCGauuuAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 38686 | 0.66 | 0.878231 |
Target: 5'- gGcGGCAcCGACGUGCCCaccaccgGCgugAAcgGCa -3' miRNA: 3'- aC-CCGUaGCUGCAUGGG-------CGa--UUuaUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 37409 | 0.66 | 0.870833 |
Target: 5'- gGGGCAUCG-CGg---CGCUGAAaGCg -3' miRNA: 3'- aCCCGUAGCuGCauggGCGAUUUaUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 17363 | 0.66 | 0.870833 |
Target: 5'- cUGGGUggCGAUGcUGCCCGauggUAAcgGCg -3' miRNA: 3'- -ACCCGuaGCUGC-AUGGGCg---AUUuaUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 15696 | 0.66 | 0.870833 |
Target: 5'- cGGGCGcgcUGGCGgugGCCCgGCUuugcAAUACg -3' miRNA: 3'- aCCCGUa--GCUGCa--UGGG-CGAu---UUAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 30470 | 0.66 | 0.86149 |
Target: 5'- gGGGCGccggucaUCG-CGUcACCUGCUGAAa-- -3' miRNA: 3'- aCCCGU-------AGCuGCA-UGGGCGAUUUaug -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 21180 | 0.66 | 0.853605 |
Target: 5'- cUGGGCAUCGAC---CCCGaguUGAucGUGCc -3' miRNA: 3'- -ACCCGUAGCUGcauGGGCg--AUU--UAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 18222 | 0.66 | 0.844599 |
Target: 5'- cGGGCuGUCGggauaagccACGU-UCUGCUGGAUGCc -3' miRNA: 3'- aCCCG-UAGC---------UGCAuGGGCGAUUUAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 10756 | 0.66 | 0.835344 |
Target: 5'- aGGGCGcgcUCGACuucgGCCCGCa------ -3' miRNA: 3'- aCCCGU---AGCUGca--UGGGCGauuuaug -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 24095 | 0.66 | 0.835344 |
Target: 5'- gGGGCAcgGGCac-CCCGCUAcAUGCg -3' miRNA: 3'- aCCCGUagCUGcauGGGCGAUuUAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 24304 | 0.67 | 0.825852 |
Target: 5'- cGGGCGacaaguUCGACGUACCggacggCGCgaag-GCg -3' miRNA: 3'- aCCCGU------AGCUGCAUGG------GCGauuuaUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 13344 | 0.67 | 0.825852 |
Target: 5'- cGGGCcugaccUCGGCGcccgaggaugACCCGCUGAuggccUACg -3' miRNA: 3'- aCCCGu-----AGCUGCa---------UGGGCGAUUu----AUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 21125 | 0.67 | 0.825852 |
Target: 5'- -uGGUAUCGACGcUGCCCaGCUug--GCc -3' miRNA: 3'- acCCGUAGCUGC-AUGGG-CGAuuuaUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 12998 | 0.67 | 0.796061 |
Target: 5'- cUGGGCG-CGACGUGCgaGCgcguggGCa -3' miRNA: 3'- -ACCCGUaGCUGCAUGggCGauuua-UG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 39372 | 0.67 | 0.785734 |
Target: 5'- cGGGCGcUUGACGUGCU-GCUGAc--- -3' miRNA: 3'- aCCCGU-AGCUGCAUGGgCGAUUuaug -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 23374 | 0.67 | 0.785734 |
Target: 5'- -cGGU---GGCGUGCCCGCUGAAa-- -3' miRNA: 3'- acCCGuagCUGCAUGGGCGAUUUaug -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 8151 | 0.67 | 0.785734 |
Target: 5'- cGGGUGUCGGCGcugcgucCCUGCgc-GUGCg -3' miRNA: 3'- aCCCGUAGCUGCau-----GGGCGauuUAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 8460 | 0.68 | 0.764558 |
Target: 5'- -cGGCGUCGAgGUgGCCUGC--GAUGCc -3' miRNA: 3'- acCCGUAGCUgCA-UGGGCGauUUAUG- -5' |
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26574 | 3' | -50.9 | NC_005357.1 | + | 5824 | 0.68 | 0.742777 |
Target: 5'- cGGGCAU-GGCGUGCCgcaGCaccGUGCg -3' miRNA: 3'- aCCCGUAgCUGCAUGGg--CGauuUAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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