Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26575 | 3' | -57.3 | NC_005357.1 | + | 965 | 0.66 | 0.53506 |
Target: 5'- gCCCAcGGCagcuugcagccaCUUGGCCGccuGGCGGUGc -3' miRNA: 3'- gGGGU-CCGa-----------GAACCGGCu--CCGUUACu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 15716 | 0.66 | 0.494826 |
Target: 5'- gCCUGGGCaUCgaacUGGCgCGAGGCcAUGc -3' miRNA: 3'- gGGGUCCG-AGa---ACCG-GCUCCGuUACu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 2243 | 0.67 | 0.484465 |
Target: 5'- aCgCCGGGC-CUUGGCC--GGCAGUu- -3' miRNA: 3'- -GgGGUCCGaGAACCGGcuCCGUUAcu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 21795 | 0.67 | 0.484465 |
Target: 5'- gUCCuGGUUCUUGGCgGAcaccGGCAGUu- -3' miRNA: 3'- gGGGuCCGAGAACCGgCU----CCGUUAcu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 19879 | 0.67 | 0.484465 |
Target: 5'- gCCgaAGGCgucgcgcgccuUCUUGGCCGuGGCAAg-- -3' miRNA: 3'- gGGg-UCCG-----------AGAACCGGCuCCGUUacu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 29622 | 0.67 | 0.454029 |
Target: 5'- gCgCCGGGCgCUugUGGCCG-GGCuuGAUGGg -3' miRNA: 3'- -GgGGUCCGaGA--ACCGGCuCCG--UUACU- -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 6340 | 0.68 | 0.405723 |
Target: 5'- gCCCCAgccaaagcgcccGGCcCgaaGGCCGGGGCGcUGGg -3' miRNA: 3'- -GGGGU------------CCGaGaa-CCGGCUCCGUuACU- -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 30089 | 0.68 | 0.387326 |
Target: 5'- gCCCGGGCgccacGGCCcuugucccAGGCGAUGAg -3' miRNA: 3'- gGGGUCCGagaa-CCGGc-------UCCGUUACU- -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 19190 | 0.68 | 0.387326 |
Target: 5'- uCCCCagcgAGGCgcggUCggUGGCCGAGGCc--GAg -3' miRNA: 3'- -GGGG----UCCG----AGa-ACCGGCUCCGuuaCU- -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 4590 | 0.68 | 0.387326 |
Target: 5'- gCgCCAGGCgaggaacugCUcGGCCucGGCGAUGAu -3' miRNA: 3'- -GgGGUCCGa--------GAaCCGGcuCCGUUACU- -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 36092 | 0.69 | 0.352218 |
Target: 5'- -gCCGGGCgcuUUGGCUGGGGCGGa-- -3' miRNA: 3'- ggGGUCCGag-AACCGGCUCCGUUacu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 41703 | 0.7 | 0.319425 |
Target: 5'- uCCgCCAGGCgcucgaCUUGGCCGuGGCc---- -3' miRNA: 3'- -GG-GGUCCGa-----GAACCGGCuCCGuuacu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 7770 | 0.72 | 0.228886 |
Target: 5'- aUCCAGGCUCgc-GCCuucgcccugcGAGGCGAUGGg -3' miRNA: 3'- gGGGUCCGAGaacCGG----------CUCCGUUACU- -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 31015 | 0.77 | 0.099757 |
Target: 5'- gUCCaCGGGCUUgccGGCCGAGGCAAUc- -3' miRNA: 3'- -GGG-GUCCGAGaa-CCGGCUCCGUUAcu -5' |
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26575 | 3' | -57.3 | NC_005357.1 | + | 27254 | 1.1 | 0.000329 |
Target: 5'- gCCCCAGGCUCUUGGCCGAGGCAAUGAa -3' miRNA: 3'- -GGGGUCCGAGAACCGGCUCCGUUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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