miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26575 5' -59.4 NC_005357.1 + 24301 0.65 0.450745
Target:  5'- aGCCGgGCGacaaguucgacguaCCggacgGcGCGAAGGCgUCCu -3'
miRNA:   3'- gCGGCgCGC--------------GGaa---C-CGCUUCCGaAGG- -5'
26575 5' -59.4 NC_005357.1 + 36275 0.66 0.44395
Target:  5'- uGCC-CGUGCCUcaccccUGGgGAAGuagccuugcgauGCUUCCc -3'
miRNA:   3'- gCGGcGCGCGGA------ACCgCUUC------------CGAAGG- -5'
26575 5' -59.4 NC_005357.1 + 13864 0.66 0.44395
Target:  5'- gGCCgacguGCGCGCCgcgaUGGCc--GGCggCCg -3'
miRNA:   3'- gCGG-----CGCGCGGa---ACCGcuuCCGaaGG- -5'
26575 5' -59.4 NC_005357.1 + 10805 0.66 0.44395
Target:  5'- -aCUGCuGCGCCUcGGCGc-GGCUgaaUCCu -3'
miRNA:   3'- gcGGCG-CGCGGAaCCGCuuCCGA---AGG- -5'
26575 5' -59.4 NC_005357.1 + 24677 0.66 0.44395
Target:  5'- cCGCCGCGgGCCacguccacGCccAGGCUgUCCa -3'
miRNA:   3'- -GCGGCGCgCGGaac-----CGcuUCCGA-AGG- -5'
26575 5' -59.4 NC_005357.1 + 33559 0.66 0.44395
Target:  5'- uGCC-CGCGCCcgcuucgUGGCGAccgAGGCc--- -3'
miRNA:   3'- gCGGcGCGCGGa------ACCGCU---UCCGaagg -5'
26575 5' -59.4 NC_005357.1 + 24911 0.66 0.44395
Target:  5'- gGUgGCGCGCuauaucagCUUGGUGAAGGacacgaCCa -3'
miRNA:   3'- gCGgCGCGCG--------GAACCGCUUCCgaa---GG- -5'
26575 5' -59.4 NC_005357.1 + 31963 0.66 0.434343
Target:  5'- uGCUGCGCGaCUUccagGGCGAcgccaaGGGCgccauugCCa -3'
miRNA:   3'- gCGGCGCGC-GGAa---CCGCU------UCCGaa-----GG- -5'
26575 5' -59.4 NC_005357.1 + 20360 0.66 0.434343
Target:  5'- aGCCGCGCGCCgaccGCGAcccgagcaAGcGCgacgaCCg -3'
miRNA:   3'- gCGGCGCGCGGaac-CGCU--------UC-CGaa---GG- -5'
26575 5' -59.4 NC_005357.1 + 17346 0.66 0.424857
Target:  5'- gCGCCggGCGCGCUgcgcugggUGGCGAu-GCUgCCc -3'
miRNA:   3'- -GCGG--CGCGCGGa-------ACCGCUucCGAaGG- -5'
26575 5' -59.4 NC_005357.1 + 12347 0.66 0.423915
Target:  5'- gGCCGUgGCGCCcgGGCGccgcacaAAGGauauUUCCg -3'
miRNA:   3'- gCGGCG-CGCGGaaCCGC-------UUCCg---AAGG- -5'
26575 5' -59.4 NC_005357.1 + 7775 0.66 0.415496
Target:  5'- gGCU-CGCGCCUUcgcccugcgaGGCGAuGGGCaugUCCc -3'
miRNA:   3'- gCGGcGCGCGGAA----------CCGCU-UCCGa--AGG- -5'
26575 5' -59.4 NC_005357.1 + 34646 0.66 0.415496
Target:  5'- uGCCcauCGCCUcgcagGGCGAAGGCgcgagCCu -3'
miRNA:   3'- gCGGcgcGCGGAa----CCGCUUCCGaa---GG- -5'
26575 5' -59.4 NC_005357.1 + 17292 0.66 0.415496
Target:  5'- aGCCG-GCGCCgcgGGCGc--GCaUCCa -3'
miRNA:   3'- gCGGCgCGCGGaa-CCGCuucCGaAGG- -5'
26575 5' -59.4 NC_005357.1 + 7961 0.66 0.415496
Target:  5'- uGCC-CGUgGCCUcGGCGcgcaucGGGUUUCCa -3'
miRNA:   3'- gCGGcGCG-CGGAaCCGCu-----UCCGAAGG- -5'
26575 5' -59.4 NC_005357.1 + 40211 0.66 0.415496
Target:  5'- uGCUGCGCGUggugcuacccgaCgagGGCGucGGCaUCCc -3'
miRNA:   3'- gCGGCGCGCG------------Gaa-CCGCuuCCGaAGG- -5'
26575 5' -59.4 NC_005357.1 + 8234 0.66 0.414567
Target:  5'- gGCCGUGC-CCUcgucGGCGAAGucGCUggaaucaUCCg -3'
miRNA:   3'- gCGGCGCGcGGAa---CCGCUUC--CGA-------AGG- -5'
26575 5' -59.4 NC_005357.1 + 16378 0.66 0.406263
Target:  5'- gCGCauggaGCGCGCCcgccGCGcGGGCUUUg -3'
miRNA:   3'- -GCGg----CGCGCGGaac-CGCuUCCGAAGg -5'
26575 5' -59.4 NC_005357.1 + 18533 0.66 0.406263
Target:  5'- aGCCGCGgGCg-UGGCGcacuuccuuGGCguaUUCCg -3'
miRNA:   3'- gCGGCGCgCGgaACCGCuu-------CCG---AAGG- -5'
26575 5' -59.4 NC_005357.1 + 36874 0.66 0.403519
Target:  5'- gCGCCGUcgauaccguggcggGCGaCCUgGGCGGaaccuGGGCggCCg -3'
miRNA:   3'- -GCGGCG--------------CGC-GGAaCCGCU-----UCCGaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.