miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26576 3' -54.1 NC_005357.1 + 15155 0.66 0.733049
Target:  5'- uGCGCCcaGGGCgacgGCUGaUGUUGCUCc -3'
miRNA:   3'- -CGUGGcaCCUGaa--UGGCaACGACGGG- -5'
26576 3' -54.1 NC_005357.1 + 3870 0.66 0.733049
Target:  5'- gGCGCCGUc-GCUguagGCCGc-GCUGCCg -3'
miRNA:   3'- -CGUGGCAccUGAa---UGGCaaCGACGGg -5'
26576 3' -54.1 NC_005357.1 + 26904 0.66 0.722212
Target:  5'- gGCACCGUGca--UAUCGgc-CUGCCCa -3'
miRNA:   3'- -CGUGGCACcugaAUGGCaacGACGGG- -5'
26576 3' -54.1 NC_005357.1 + 17735 0.66 0.722212
Target:  5'- gGCACCGaUGGACa-GCCuggGCguggacgugGCCCg -3'
miRNA:   3'- -CGUGGC-ACCUGaaUGGcaaCGa--------CGGG- -5'
26576 3' -54.1 NC_005357.1 + 5474 0.66 0.718942
Target:  5'- gGCGgCGaGGugUUGCCGaUgggggguacggcgaUGCUGCCa -3'
miRNA:   3'- -CGUgGCaCCugAAUGGC-A--------------ACGACGGg -5'
26576 3' -54.1 NC_005357.1 + 36185 0.66 0.689188
Target:  5'- cGCACCGU-----UACCGgcgUGCagGCCCu -3'
miRNA:   3'- -CGUGGCAccugaAUGGCa--ACGa-CGGG- -5'
26576 3' -54.1 NC_005357.1 + 39986 0.67 0.678049
Target:  5'- aCAUCGUGGcgccgauCUUcgagGCCGgccUGCUGCCg -3'
miRNA:   3'- cGUGGCACCu------GAA----UGGCa--ACGACGGg -5'
26576 3' -54.1 NC_005357.1 + 28878 0.67 0.678049
Target:  5'- uCGCCGUGGGC--ACCGagucagGCgGCCg -3'
miRNA:   3'- cGUGGCACCUGaaUGGCaa----CGaCGGg -5'
26576 3' -54.1 NC_005357.1 + 35348 0.67 0.667985
Target:  5'- cGCGCCGUGGGuagGCCGcgGCgucaugaaguaccugGCCg -3'
miRNA:   3'- -CGUGGCACCUgaaUGGCaaCGa--------------CGGg -5'
26576 3' -54.1 NC_005357.1 + 6295 0.67 0.655647
Target:  5'- gGCGCCG-GGGCUUAucuCCGgUGCgUGCa- -3'
miRNA:   3'- -CGUGGCaCCUGAAU---GGCaACG-ACGgg -5'
26576 3' -54.1 NC_005357.1 + 22750 0.67 0.644406
Target:  5'- aGCAgaGUGGACUUGCCcaggGUgaggGCCg -3'
miRNA:   3'- -CGUggCACCUGAAUGGcaa-CGa---CGGg -5'
26576 3' -54.1 NC_005357.1 + 33654 0.67 0.633153
Target:  5'- cCAUCGUGc----GCCGcgUGCUGCCCg -3'
miRNA:   3'- cGUGGCACcugaaUGGCa-ACGACGGG- -5'
26576 3' -54.1 NC_005357.1 + 29931 0.67 0.633153
Target:  5'- aGUGCCGUGG-CUUGCCaGUcaggUGgUGCUUg -3'
miRNA:   3'- -CGUGGCACCuGAAUGG-CA----ACgACGGG- -5'
26576 3' -54.1 NC_005357.1 + 32517 0.67 0.633153
Target:  5'- cGCGCCcGUGcaGGCUggugaUGCCGgccaggaUGCUGCCg -3'
miRNA:   3'- -CGUGG-CAC--CUGA-----AUGGCa------ACGACGGg -5'
26576 3' -54.1 NC_005357.1 + 14622 0.67 0.633153
Target:  5'- cGCGCgCGaGGACgUGCUGcgGCUGCgCg -3'
miRNA:   3'- -CGUG-GCaCCUGaAUGGCaaCGACGgG- -5'
26576 3' -54.1 NC_005357.1 + 28799 0.68 0.621899
Target:  5'- cGCGCC--GGACUugcugccgcUACCGaUGCUGUCg -3'
miRNA:   3'- -CGUGGcaCCUGA---------AUGGCaACGACGGg -5'
26576 3' -54.1 NC_005357.1 + 34426 0.68 0.59943
Target:  5'- gGCGCCaaGGGCacguccgacGCCGUggugcUGCUGCCUg -3'
miRNA:   3'- -CGUGGcaCCUGaa-------UGGCA-----ACGACGGG- -5'
26576 3' -54.1 NC_005357.1 + 18764 0.68 0.588234
Target:  5'- -gACCGaGGGuCgccuggUGCaGUUGCUGCCCg -3'
miRNA:   3'- cgUGGCaCCU-Ga-----AUGgCAACGACGGG- -5'
26576 3' -54.1 NC_005357.1 + 13941 0.68 0.588234
Target:  5'- aGCGCCGUGGACUgga------UGCCCu -3'
miRNA:   3'- -CGUGGCACCUGAauggcaacgACGGG- -5'
26576 3' -54.1 NC_005357.1 + 8686 0.68 0.577077
Target:  5'- uGCGCCGcccaGGugUgcGCCGcgcagaUUGCUGCCg -3'
miRNA:   3'- -CGUGGCa---CCugAa-UGGC------AACGACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.