Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26577 | 5' | -49.9 | NC_005357.1 | + | 15010 | 0.68 | 0.813767 |
Target: 5'- cGGGCGCGGUGCGccaggcgcgcgacGACUacAAGAGCg -3' miRNA: 3'- cCCUGUGCCGCGCu------------UUGAacUUCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 18317 | 0.68 | 0.807806 |
Target: 5'- -aGACACGGCaguaGCGGcgcAGCUUGguGGGCa -3' miRNA: 3'- ccCUGUGCCG----CGCU---UUGAACuuCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 12407 | 0.69 | 0.776948 |
Target: 5'- uGGGGCACcaagGGCGCGGccguGCagUUGGAGcACg -3' miRNA: 3'- -CCCUGUG----CCGCGCUu---UG--AACUUCuUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 34208 | 0.69 | 0.773774 |
Target: 5'- aGGGCACGGcCGCGcacGAACUggccgccaugucgcUGAcGAACg -3' miRNA: 3'- cCCUGUGCC-GCGC---UUUGA--------------ACUuCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 36276 | 0.7 | 0.722367 |
Target: 5'- uGGGAagaugACGGCgGCGAGuggguGCUgaugGAAGGGCa -3' miRNA: 3'- -CCCUg----UGCCG-CGCUU-----UGAa---CUUCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 13569 | 0.7 | 0.699743 |
Target: 5'- aGGACGUGGCGCGgcGCU---GGGACa -3' miRNA: 3'- cCCUGUGCCGCGCuuUGAacuUCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 9776 | 0.71 | 0.676826 |
Target: 5'- cGGGcagcuuCGCGGCGCcGAACUUcGAcAGGACa -3' miRNA: 3'- -CCCu-----GUGCCGCGcUUUGAA-CU-UCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 6815 | 0.71 | 0.653721 |
Target: 5'- aGGGACACGGCGCGGGu---------- -3' miRNA: 3'- -CCCUGUGCCGCGCUUugaacuucuug -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 41630 | 0.71 | 0.652563 |
Target: 5'- uGGGCGCGGCGCgucgccgGAAACcUGAaauacgcugcggAGGACa -3' miRNA: 3'- cCCUGUGCCGCG-------CUUUGaACU------------UCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 32235 | 0.71 | 0.64213 |
Target: 5'- cGGGC-CGGCGUGc-GCUUGAcguGGGACg -3' miRNA: 3'- cCCUGuGCCGCGCuuUGAACU---UCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 27004 | 0.81 | 0.208126 |
Target: 5'- uGGGGCuacaGCGGCGCGGAuauguACcgUGAAGGACa -3' miRNA: 3'- -CCCUG----UGCCGCGCUU-----UGa-ACUUCUUG- -5' |
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26577 | 5' | -49.9 | NC_005357.1 | + | 28290 | 1.02 | 0.009019 |
Target: 5'- uGGGACACGGCGCaGAACUUGAAGAACu -3' miRNA: 3'- -CCCUGUGCCGCGcUUUGAACUUCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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