miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26577 5' -49.9 NC_005357.1 + 28290 1.02 0.009019
Target:  5'- uGGGACACGGCGCaGAACUUGAAGAACu -3'
miRNA:   3'- -CCCUGUGCCGCGcUUUGAACUUCUUG- -5'
26577 5' -49.9 NC_005357.1 + 35314 0.66 0.923068
Target:  5'- cGGACGUGaGCGgGGAAaccgUGGAGGACu -3'
miRNA:   3'- cCCUGUGC-CGCgCUUUga--ACUUCUUG- -5'
26577 5' -49.9 NC_005357.1 + 16418 0.66 0.923068
Target:  5'- aGGACACGGCcGCGGgguaaucgccGGCggcGuuGAACa -3'
miRNA:   3'- cCCUGUGCCG-CGCU----------UUGaa-CuuCUUG- -5'
26577 5' -49.9 NC_005357.1 + 33791 0.66 0.910008
Target:  5'- -cGGCGCGGCcUGggGCguuuccGAAGGGCg -3'
miRNA:   3'- ccCUGUGCCGcGCuuUGaa----CUUCUUG- -5'
26577 5' -49.9 NC_005357.1 + 21298 0.66 0.910008
Target:  5'- cGGu--CGGCGUcGAACUUGucGAGCa -3'
miRNA:   3'- cCCuguGCCGCGcUUUGAACuuCUUG- -5'
26577 5' -49.9 NC_005357.1 + 21955 0.66 0.910008
Target:  5'- cGGGGCACaGuGCGCGGAACgaccGAuagccGGAuucGCg -3'
miRNA:   3'- -CCCUGUG-C-CGCGCUUUGaa--CU-----UCU---UG- -5'
26577 5' -49.9 NC_005357.1 + 18054 0.66 0.903022
Target:  5'- gGGGGCcuuacCGGCGCGGggUgcgUGcuGGGCc -3'
miRNA:   3'- -CCCUGu----GCCGCGCUuuGa--ACuuCUUG- -5'
26577 5' -49.9 NC_005357.1 + 13465 0.67 0.888153
Target:  5'- cGGGCGCGGUGUcGGGCaUGAccuGGGCg -3'
miRNA:   3'- cCCUGUGCCGCGcUUUGaACUu--CUUG- -5'
26577 5' -49.9 NC_005357.1 + 6077 0.67 0.879479
Target:  5'- aGGGAUACGGCcccGCGAcccGAUcugugcuUUGGAcGGACa -3'
miRNA:   3'- -CCCUGUGCCG---CGCU---UUG-------AACUU-CUUG- -5'
26577 5' -49.9 NC_005357.1 + 18584 0.67 0.872126
Target:  5'- cGGugACGGCcuggccgucCGAGACUUGGAGc-- -3'
miRNA:   3'- cCCugUGCCGc--------GCUUUGAACUUCuug -5'
26577 5' -49.9 NC_005357.1 + 27004 0.81 0.208126
Target:  5'- uGGGGCuacaGCGGCGCGGAuauguACcgUGAAGGACa -3'
miRNA:   3'- -CCCUG----UGCCGCGCUU-----UGa-ACUUCUUG- -5'
26577 5' -49.9 NC_005357.1 + 6815 0.71 0.653721
Target:  5'- aGGGACACGGCGCGGGu---------- -3'
miRNA:   3'- -CCCUGUGCCGCGCUUugaacuucuug -5'
26577 5' -49.9 NC_005357.1 + 36276 0.7 0.722367
Target:  5'- uGGGAagaugACGGCgGCGAGuggguGCUgaugGAAGGGCa -3'
miRNA:   3'- -CCCUg----UGCCG-CGCUU-----UGAa---CUUCUUG- -5'
26577 5' -49.9 NC_005357.1 + 34208 0.69 0.773774
Target:  5'- aGGGCACGGcCGCGcacGAACUggccgccaugucgcUGAcGAACg -3'
miRNA:   3'- cCCUGUGCC-GCGC---UUUGA--------------ACUuCUUG- -5'
26577 5' -49.9 NC_005357.1 + 18317 0.68 0.807806
Target:  5'- -aGACACGGCaguaGCGGcgcAGCUUGguGGGCa -3'
miRNA:   3'- ccCUGUGCCG----CGCU---UUGAACuuCUUG- -5'
26577 5' -49.9 NC_005357.1 + 19438 0.68 0.846034
Target:  5'- --uGCACGGUGCGGGACUUcucGGGCu -3'
miRNA:   3'- cccUGUGCCGCGCUUUGAAcuuCUUG- -5'
26577 5' -49.9 NC_005357.1 + 33507 0.67 0.863694
Target:  5'- -cGGCACGGCcaccgcugGCGAGAaa-GGAGAACu -3'
miRNA:   3'- ccCUGUGCCG--------CGCUUUgaaCUUCUUG- -5'
26577 5' -49.9 NC_005357.1 + 6206 0.66 0.923068
Target:  5'- aGGugACGGCGCGcgGCUccUGGu---- -3'
miRNA:   3'- cCCugUGCCGCGCuuUGA--ACUucuug -5'
26577 5' -49.9 NC_005357.1 + 41630 0.71 0.652563
Target:  5'- uGGGCGCGGCGCgucgccgGAAACcUGAaauacgcugcggAGGACa -3'
miRNA:   3'- cCCUGUGCCGCG-------CUUUGaACU------------UCUUG- -5'
26577 5' -49.9 NC_005357.1 + 9776 0.71 0.676826
Target:  5'- cGGGcagcuuCGCGGCGCcGAACUUcGAcAGGACa -3'
miRNA:   3'- -CCCu-----GUGCCGCGcUUUGAA-CU-UCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.