miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26579 3' -64.4 NC_005357.1 + 18417 0.66 0.234822
Target:  5'- gGCGaaGGUGGCgUUGUCCgCcgAGUCCUg -3'
miRNA:   3'- -CGCggCCACCGgAACGGG-G--UCGGGAg -5'
26579 3' -64.4 NC_005357.1 + 692 0.66 0.217577
Target:  5'- gGCGCCGGccgGGCC--GCCCaagauaccGCCCa- -3'
miRNA:   3'- -CGCGGCCa--CCGGaaCGGGgu------CGGGag -5'
26579 3' -64.4 NC_005357.1 + 11391 0.66 0.211531
Target:  5'- cGCGCaCGuUGGCCcgcgcgaUUGCCUCGGCCg-- -3'
miRNA:   3'- -CGCG-GCcACCGG-------AACGGGGUCGGgag -5'
26579 3' -64.4 NC_005357.1 + 1274 0.66 0.206692
Target:  5'- aGCGCCGGUau-----UCCCGGCCCUCg -3'
miRNA:   3'- -CGCGGCCAccggaacGGGGUCGGGAG- -5'
26579 3' -64.4 NC_005357.1 + 19202 0.66 0.206692
Target:  5'- cGCgGUCGGUGGCCgagGCCgaGGCCg-- -3'
miRNA:   3'- -CG-CGGCCACCGGaa-CGGggUCGGgag -5'
26579 3' -64.4 NC_005357.1 + 10008 0.67 0.201428
Target:  5'- aGUGCCGcgcGCCcgGCCCCcGCCCUg -3'
miRNA:   3'- -CGCGGCcacCGGaaCGGGGuCGGGAg -5'
26579 3' -64.4 NC_005357.1 + 7423 0.67 0.198325
Target:  5'- gGCaCCGGaUGGCCggccagcaguucgGCUUCGGCCUUCg -3'
miRNA:   3'- -CGcGGCC-ACCGGaa-----------CGGGGUCGGGAG- -5'
26579 3' -64.4 NC_005357.1 + 25304 0.67 0.196281
Target:  5'- cGUGCgGccGGCCcUGCCaCCGGCgCUCg -3'
miRNA:   3'- -CGCGgCcaCCGGaACGG-GGUCGgGAG- -5'
26579 3' -64.4 NC_005357.1 + 23211 0.67 0.196281
Target:  5'- uCGUCGGUgaauucGGCCUcgGCCUCGGCCa-- -3'
miRNA:   3'- cGCGGCCA------CCGGAa-CGGGGUCGGgag -5'
26579 3' -64.4 NC_005357.1 + 5691 0.67 0.191249
Target:  5'- uUGCCGGccuuguccuUGGCCUUGUCggUCGGCaCCUUg -3'
miRNA:   3'- cGCGGCC---------ACCGGAACGG--GGUCG-GGAG- -5'
26579 3' -64.4 NC_005357.1 + 22717 0.67 0.18633
Target:  5'- uGCGCuCGGUuugcucGGCCacguuaUUGCCCCAGCagaguggaCUUg -3'
miRNA:   3'- -CGCG-GCCA------CCGG------AACGGGGUCGg-------GAG- -5'
26579 3' -64.4 NC_005357.1 + 24140 0.67 0.181523
Target:  5'- -aGCCGGcUGcgcGCC-UGgCCCAGCgCCUCg -3'
miRNA:   3'- cgCGGCC-AC---CGGaACgGGGUCG-GGAG- -5'
26579 3' -64.4 NC_005357.1 + 8620 0.67 0.181049
Target:  5'- uGCGCuucucggccgcugCGGUGGCgagGUCgCCGGCCUUCa -3'
miRNA:   3'- -CGCG-------------GCCACCGgaaCGG-GGUCGGGAG- -5'
26579 3' -64.4 NC_005357.1 + 22675 0.67 0.176827
Target:  5'- cGCGCuCGGUGcGCagUUGcCCCCAGCgCg- -3'
miRNA:   3'- -CGCG-GCCAC-CGg-AAC-GGGGUCGgGag -5'
26579 3' -64.4 NC_005357.1 + 28155 0.68 0.174061
Target:  5'- uUGCCGGUGGUCagaucgaccacgccgUUGCCCaC-GCCCa- -3'
miRNA:   3'- cGCGGCCACCGG---------------AACGGG-GuCGGGag -5'
26579 3' -64.4 NC_005357.1 + 7627 0.68 0.163381
Target:  5'- aGCGCCGGacacgUGGCCUUGgCCUuGCagaaUCg -3'
miRNA:   3'- -CGCGGCC-----ACCGGAACgGGGuCGgg--AG- -5'
26579 3' -64.4 NC_005357.1 + 11209 0.68 0.159107
Target:  5'- cGCGCCGG-GGuUCUucaUGCUUUcGCCCUCg -3'
miRNA:   3'- -CGCGGCCaCC-GGA---ACGGGGuCGGGAG- -5'
26579 3' -64.4 NC_005357.1 + 16167 0.68 0.154934
Target:  5'- -aGCCGaccaGGCCggcgggUGCCCguGCCUUCg -3'
miRNA:   3'- cgCGGCca--CCGGa-----ACGGGguCGGGAG- -5'
26579 3' -64.4 NC_005357.1 + 24381 0.68 0.154934
Target:  5'- cGCGCCGGUaaGGCC---CCCaagCAGCCCg- -3'
miRNA:   3'- -CGCGGCCA--CCGGaacGGG---GUCGGGag -5'
26579 3' -64.4 NC_005357.1 + 5353 0.69 0.128407
Target:  5'- cGCGCUGcGUGGCCgccUGCaCCGcGCCCa- -3'
miRNA:   3'- -CGCGGC-CACCGGa--ACGgGGU-CGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.