Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26579 | 3' | -64.4 | NC_005357.1 | + | 29362 | 1.11 | 0.00006 |
Target: 5'- cGCGCCGGUGGCCUUGCCCCAGCCCUCg -3' miRNA: 3'- -CGCGGCCACCGGAACGGGGUCGGGAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 18417 | 0.66 | 0.234822 |
Target: 5'- gGCGaaGGUGGCgUUGUCCgCcgAGUCCUg -3' miRNA: 3'- -CGCggCCACCGgAACGGG-G--UCGGGAg -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 692 | 0.66 | 0.217577 |
Target: 5'- gGCGCCGGccgGGCC--GCCCaagauaccGCCCa- -3' miRNA: 3'- -CGCGGCCa--CCGGaaCGGGgu------CGGGag -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 10008 | 0.67 | 0.201428 |
Target: 5'- aGUGCCGcgcGCCcgGCCCCcGCCCUg -3' miRNA: 3'- -CGCGGCcacCGGaaCGGGGuCGGGAg -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 25304 | 0.67 | 0.196281 |
Target: 5'- cGUGCgGccGGCCcUGCCaCCGGCgCUCg -3' miRNA: 3'- -CGCGgCcaCCGGaACGG-GGUCGgGAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 23211 | 0.67 | 0.196281 |
Target: 5'- uCGUCGGUgaauucGGCCUcgGCCUCGGCCa-- -3' miRNA: 3'- cGCGGCCA------CCGGAa-CGGGGUCGGgag -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 22717 | 0.67 | 0.18633 |
Target: 5'- uGCGCuCGGUuugcucGGCCacguuaUUGCCCCAGCagaguggaCUUg -3' miRNA: 3'- -CGCG-GCCA------CCGG------AACGGGGUCGg-------GAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 24140 | 0.67 | 0.181523 |
Target: 5'- -aGCCGGcUGcgcGCC-UGgCCCAGCgCCUCg -3' miRNA: 3'- cgCGGCC-AC---CGGaACgGGGUCG-GGAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 8620 | 0.67 | 0.181049 |
Target: 5'- uGCGCuucucggccgcugCGGUGGCgagGUCgCCGGCCUUCa -3' miRNA: 3'- -CGCG-------------GCCACCGgaaCGG-GGUCGGGAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 22675 | 0.67 | 0.176827 |
Target: 5'- cGCGCuCGGUGcGCagUUGcCCCCAGCgCg- -3' miRNA: 3'- -CGCG-GCCAC-CGg-AAC-GGGGUCGgGag -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 27499 | 0.74 | 0.05443 |
Target: 5'- aUGCCGGcGGCCUcgGCCgCCAGCUuCUCg -3' miRNA: 3'- cGCGGCCaCCGGAa-CGG-GGUCGG-GAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 27435 | 0.71 | 0.100468 |
Target: 5'- cGCGcCCGGcGGCCgcagGCCCUGGCgCUg -3' miRNA: 3'- -CGC-GGCCaCCGGaa--CGGGGUCGgGAg -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 36045 | 0.7 | 0.105843 |
Target: 5'- gGCGCCGcGgcGGCCgaccUgguguaacccagcGCCCCGGCCUUCg -3' miRNA: 3'- -CGCGGC-Ca-CCGGa---A-------------CGGGGUCGGGAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 39598 | 0.7 | 0.115197 |
Target: 5'- gGCGCCGcugcgcGUGGCCgcgaGCaCCUGGCCCg- -3' miRNA: 3'- -CGCGGC------CACCGGaa--CG-GGGUCGGGag -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 16518 | 0.7 | 0.118375 |
Target: 5'- gGUGCCGGUGGUCUgGCCgauaUAGCCgUa -3' miRNA: 3'- -CGCGGCCACCGGAaCGGg---GUCGGgAg -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 28155 | 0.68 | 0.174061 |
Target: 5'- uUGCCGGUGGUCagaucgaccacgccgUUGCCCaC-GCCCa- -3' miRNA: 3'- cGCGGCCACCGG---------------AACGGG-GuCGGGag -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 11391 | 0.66 | 0.211531 |
Target: 5'- cGCGCaCGuUGGCCcgcgcgaUUGCCUCGGCCg-- -3' miRNA: 3'- -CGCG-GCcACCGG-------AACGGGGUCGGgag -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 17122 | 0.71 | 0.095089 |
Target: 5'- aGCGCCGGUGGCagggccgGCCgCAcGaCCUCa -3' miRNA: 3'- -CGCGGCCACCGgaa----CGGgGU-CgGGAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 31458 | 0.71 | 0.097744 |
Target: 5'- -gGCCgaacaGGUGGCCgcagUGuCCCCGGCUgUCg -3' miRNA: 3'- cgCGG-----CCACCGGa---AC-GGGGUCGGgAG- -5' |
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26579 | 3' | -64.4 | NC_005357.1 | + | 5353 | 0.69 | 0.128407 |
Target: 5'- cGCGCUGcGUGGCCgccUGCaCCGcGCCCa- -3' miRNA: 3'- -CGCGGC-CACCGGa--ACGgGGU-CGGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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