miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2658 5' -54.8 NC_001491.2 + 1345 0.67 0.909506
Target:  5'- gAGCUCGUcgUCG-GGCuccgGCAGGCACa -3'
miRNA:   3'- aUUGAGCG--AGUgCCGca--UGUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 1483 0.67 0.909506
Target:  5'- gGGCUCgGC-CuCGGCGU-CGGGCuCCa -3'
miRNA:   3'- aUUGAG-CGaGuGCCGCAuGUCCGuGG- -5'
2658 5' -54.8 NC_001491.2 + 3975 0.66 0.915514
Target:  5'- cGGCg-GCUCAUGGCcacCAGGCgGCCg -3'
miRNA:   3'- aUUGagCGAGUGCCGcauGUCCG-UGG- -5'
2658 5' -54.8 NC_001491.2 + 5741 0.68 0.874431
Target:  5'- gUGGCgggGUUcCGCGGCGggcgcucggacgACGGGCGCCg -3'
miRNA:   3'- -AUUGag-CGA-GUGCCGCa-----------UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 7656 0.7 0.764586
Target:  5'- aUGGCUgGgUUACGGUGUGCggcuauggggggGGGCGCUa -3'
miRNA:   3'- -AUUGAgCgAGUGCCGCAUG------------UCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 10117 0.67 0.890042
Target:  5'- gGACgCGCUCcggaGCGGCGc-CGGGcCGCCc -3'
miRNA:   3'- aUUGaGCGAG----UGCCGCauGUCC-GUGG- -5'
2658 5' -54.8 NC_001491.2 + 10515 0.71 0.705164
Target:  5'- cAGC-CGC-CGCGGCGUACcuGcGCGCCc -3'
miRNA:   3'- aUUGaGCGaGUGCCGCAUGu-C-CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 12478 0.67 0.883083
Target:  5'- ----cCGC-C-CGGCGggcgGCGGGCGCCc -3'
miRNA:   3'- auugaGCGaGuGCCGCa---UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 14990 0.69 0.828288
Target:  5'- gUGugUUGUUC-CGG-GUGCAGGCagGCCa -3'
miRNA:   3'- -AUugAGCGAGuGCCgCAUGUCCG--UGG- -5'
2658 5' -54.8 NC_001491.2 + 23184 0.66 0.932068
Target:  5'- ---aUC-CUC-UGuGCGUGCAGGUACCg -3'
miRNA:   3'- auugAGcGAGuGC-CGCAUGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 25143 0.68 0.868484
Target:  5'- cAACUCca--GCGGCGaGgAGGCGCCg -3'
miRNA:   3'- aUUGAGcgagUGCCGCaUgUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 26699 0.71 0.715281
Target:  5'- gAGCUUGCggcCGCgGGCGcGCAGGUACg -3'
miRNA:   3'- aUUGAGCGa--GUG-CCGCaUGUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 45460 0.68 0.853015
Target:  5'- aAACUCGCUCA-GGUuUACGuucaGCACCg -3'
miRNA:   3'- aUUGAGCGAGUgCCGcAUGUc---CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 46727 0.67 0.883083
Target:  5'- uUAGCUCGC-CAaacuCGUACuccuGGCACCg -3'
miRNA:   3'- -AUUGAGCGaGUgcc-GCAUGu---CCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 49011 0.74 0.52064
Target:  5'- cAAUUUGCUCAgCGGCGcGCAGGUagacACCu -3'
miRNA:   3'- aUUGAGCGAGU-GCCGCaUGUCCG----UGG- -5'
2658 5' -54.8 NC_001491.2 + 51301 0.69 0.792796
Target:  5'- aAGCUCGCcuUCGCGGCucUGCcGGCcCCg -3'
miRNA:   3'- aUUGAGCG--AGUGCCGc-AUGuCCGuGG- -5'
2658 5' -54.8 NC_001491.2 + 53883 0.71 0.684748
Target:  5'- gGGC-CGCUgGaGGCGcagGCAGGCGCCc -3'
miRNA:   3'- aUUGaGCGAgUgCCGCa--UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 55688 0.67 0.890042
Target:  5'- aUAACUCGC-CAUGGCacgACGGGgAgCa -3'
miRNA:   3'- -AUUGAGCGaGUGCCGca-UGUCCgUgG- -5'
2658 5' -54.8 NC_001491.2 + 64221 0.67 0.890042
Target:  5'- cAACUCGgcaGCGGCGUcaaacgcggccACGGGCGgCg -3'
miRNA:   3'- aUUGAGCgagUGCCGCA-----------UGUCCGUgG- -5'
2658 5' -54.8 NC_001491.2 + 64791 0.66 0.921277
Target:  5'- aGAgUCGgaCGCGuGUGccccGCGGGCACCc -3'
miRNA:   3'- aUUgAGCgaGUGC-CGCa---UGUCCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.