miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2658 5' -54.8 NC_001491.2 + 138292 0.68 0.860081
Target:  5'- cGACUCGggauaUCGCGGCGUcgugaaaGCGGuacaauucGCACCu -3'
miRNA:   3'- aUUGAGCg----AGUGCCGCA-------UGUC--------CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 115577 0.68 0.853015
Target:  5'- cGGCcCGCUguUGGCGgugcuucGCAGGCGCg -3'
miRNA:   3'- aUUGaGCGAguGCCGCa------UGUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 45460 0.68 0.853015
Target:  5'- aAACUCGCUCA-GGUuUACGuucaGCACCg -3'
miRNA:   3'- aUUGAGCGAGUgCCGcAUGUc---CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 95146 0.68 0.844968
Target:  5'- cGACcagCGa-CGCGGUGUACacguGGGCACCu -3'
miRNA:   3'- aUUGa--GCgaGUGCCGCAUG----UCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 69413 0.68 0.836724
Target:  5'- cGGCUCug-UACGGCGUGCu-GCGCCa -3'
miRNA:   3'- aUUGAGcgaGUGCCGCAUGucCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 136888 0.69 0.828288
Target:  5'- cGGCaUCGCUCGC-GUGUGC-GGCAgCCa -3'
miRNA:   3'- aUUG-AGCGAGUGcCGCAUGuCCGU-GG- -5'
2658 5' -54.8 NC_001491.2 + 14990 0.69 0.828288
Target:  5'- gUGugUUGUUC-CGG-GUGCAGGCagGCCa -3'
miRNA:   3'- -AUugAGCGAGuGCCgCAUGUCCG--UGG- -5'
2658 5' -54.8 NC_001491.2 + 131910 0.69 0.819669
Target:  5'- aUAACaUCGCUgGgGGuUGgcaGCAGGCACCc -3'
miRNA:   3'- -AUUG-AGCGAgUgCC-GCa--UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 51301 0.69 0.792796
Target:  5'- aAGCUCGCcuUCGCGGCucUGCcGGCcCCg -3'
miRNA:   3'- aUUGAGCG--AGUGCCGc-AUGuCCGuGG- -5'
2658 5' -54.8 NC_001491.2 + 7656 0.7 0.764586
Target:  5'- aUGGCUgGgUUACGGUGUGCggcuauggggggGGGCGCUa -3'
miRNA:   3'- -AUUGAgCgAGUGCCGCAUG------------UCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 26699 0.71 0.715281
Target:  5'- gAGCUUGCggcCGCgGGCGcGCAGGUACg -3'
miRNA:   3'- aUUGAGCGa--GUG-CCGCaUGUCCGUGg -5'
2658 5' -54.8 NC_001491.2 + 10515 0.71 0.705164
Target:  5'- cAGC-CGC-CGCGGCGUACcuGcGCGCCc -3'
miRNA:   3'- aUUGaGCGaGUGCCGCAUGu-C-CGUGG- -5'
2658 5' -54.8 NC_001491.2 + 53883 0.71 0.684748
Target:  5'- gGGC-CGCUgGaGGCGcagGCAGGCGCCc -3'
miRNA:   3'- aUUGaGCGAgUgCCGCa--UGUCCGUGG- -5'
2658 5' -54.8 NC_001491.2 + 49011 0.74 0.52064
Target:  5'- cAAUUUGCUCAgCGGCGcGCAGGUagacACCu -3'
miRNA:   3'- aUUGAGCGAGU-GCCGCaUGUCCG----UGG- -5'
2658 5' -54.8 NC_001491.2 + 115241 0.75 0.500923
Target:  5'- gGACUCcCUCGCGGCGcUAUGGGUuCCg -3'
miRNA:   3'- aUUGAGcGAGUGCCGC-AUGUCCGuGG- -5'
2658 5' -54.8 NC_001491.2 + 89953 1.11 0.002542
Target:  5'- uUAACUCGCUCACGGCGUACAGGCACCg -3'
miRNA:   3'- -AUUGAGCGAGUGCCGCAUGUCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.