Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 1089 | 0.66 | 0.72402 |
Target: 5'- gCGCGuacuUCAuguUGGCGGCGGUAGGCg-- -3' miRNA: 3'- gGUGC----AGUu--ACCGCUGCUGUCCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 1305 | 0.66 | 0.72402 |
Target: 5'- gCCGCGcCcagGGCGACGGCcaccAGGCcGa -3' miRNA: 3'- -GGUGCaGuuaCCGCUGCUG----UCCGaCa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 2308 | 0.68 | 0.601382 |
Target: 5'- ---aGUCGcgGGCGuccaGCGACAGGCa-- -3' miRNA: 3'- ggugCAGUuaCCGC----UGCUGUCCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 2959 | 0.68 | 0.579032 |
Target: 5'- gCACGUCGAgcacgugauCGAUGACAGGUUGc -3' miRNA: 3'- gGUGCAGUUacc------GCUGCUGUCCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 5427 | 0.68 | 0.601382 |
Target: 5'- uCCACGgcgCgGAUGGCGGCG-UGGGCgagGUc -3' miRNA: 3'- -GGUGCa--G-UUACCGCUGCuGUCCGa--CA- -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 5995 | 0.67 | 0.646331 |
Target: 5'- uCUGCGUCGcucaaaAUGGCGACGACuucGCcgGUg -3' miRNA: 3'- -GGUGCAGU------UACCGCUGCUGuc-CGa-CA- -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 7837 | 0.68 | 0.623842 |
Target: 5'- cCCAUGUucagcgCGAUGGUGA-GGCGGGCUu- -3' miRNA: 3'- -GGUGCA------GUUACCGCUgCUGUCCGAca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 8555 | 0.81 | 0.105565 |
Target: 5'- gCCGCGcCGAUGGCGggcaGCGACAGGCg-- -3' miRNA: 3'- -GGUGCaGUUACCGC----UGCUGUCCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 9327 | 0.68 | 0.623842 |
Target: 5'- gCACGUC---GGCG-CGGCGGGCg-- -3' miRNA: 3'- gGUGCAGuuaCCGCuGCUGUCCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 10678 | 0.67 | 0.655317 |
Target: 5'- cCCAUGUCAaugcGUcagcgcauauuuuuaGGCGugaaaaagcccgcgcGCGGCGGGCUGg -3' miRNA: 3'- -GGUGCAGU----UA---------------CCGC---------------UGCUGUCCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 11383 | 0.67 | 0.635088 |
Target: 5'- gCACcUCGGUGGCGACcuGAUGGGCc-- -3' miRNA: 3'- gGUGcAGUUACCGCUG--CUGUCCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 14303 | 0.66 | 0.734833 |
Target: 5'- cCCACGUCGuugcugaacUGGCGcGCGcCuuGGCUGa -3' miRNA: 3'- -GGUGCAGUu--------ACCGC-UGCuGu-CCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 14533 | 0.68 | 0.582374 |
Target: 5'- gCCACGUCGccGGCGccggacaacagcgACGAgaaacccgccccuacCGGGCUGa -3' miRNA: 3'- -GGUGCAGUuaCCGC-------------UGCU---------------GUCCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 14818 | 0.7 | 0.502674 |
Target: 5'- cCCAuCGUCAagGGCGACGACcacgccaucuGGCg-- -3' miRNA: 3'- -GGU-GCAGUuaCCGCUGCUGu---------CCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 15030 | 0.66 | 0.691058 |
Target: 5'- uCCGCGUUGGuguUGGCGAUGcccgcguugauGCGGGCa-- -3' miRNA: 3'- -GGUGCAGUU---ACCGCUGC-----------UGUCCGaca -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 15560 | 0.73 | 0.339917 |
Target: 5'- uCCAgGUCAAUGGCGccgucagugACGACGcGCUGc -3' miRNA: 3'- -GGUgCAGUUACCGC---------UGCUGUcCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 15883 | 0.67 | 0.657561 |
Target: 5'- gCACGuUCAAggagGGCGGCGcCAuGCUGa -3' miRNA: 3'- gGUGC-AGUUa---CCGCUGCuGUcCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 16121 | 0.71 | 0.44091 |
Target: 5'- gCACGUCGGUGGCcccGACG-UAGGaCUGc -3' miRNA: 3'- gGUGCAGUUACCG---CUGCuGUCC-GACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 17657 | 0.82 | 0.083651 |
Target: 5'- gCCACGaUCuuGAUGGCGuCGGCGGGCUGg -3' miRNA: 3'- -GGUGC-AG--UUACCGCuGCUGUCCGACa -5' |
|||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 18559 | 0.67 | 0.684391 |
Target: 5'- aUCACGUCGGUggaggccgcgcucgcGGUGACGGCcuGGCcGUc -3' miRNA: 3'- -GGUGCAGUUA---------------CCGCUGCUGu-CCGaCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home