Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26580 | 5' | -54.1 | NC_005357.1 | + | 41135 | 0.68 | 0.612603 |
Target: 5'- cCCugGgcgCGGcGGUGugGGCGGGCa-- -3' miRNA: 3'- -GGugCa--GUUaCCGCugCUGUCCGaca -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 2308 | 0.68 | 0.601382 |
Target: 5'- ---aGUCGcgGGCGuccaGCGACAGGCa-- -3' miRNA: 3'- ggugCAGUuaCCGC----UGCUGUCCGaca -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 5427 | 0.68 | 0.601382 |
Target: 5'- uCCACGgcgCgGAUGGCGGCG-UGGGCgagGUc -3' miRNA: 3'- -GGUGCa--G-UUACCGCUGCuGUCCGa--CA- -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 31195 | 0.68 | 0.590189 |
Target: 5'- gCCACGcUAGUgGGCGugGGCGGGaacGUg -3' miRNA: 3'- -GGUGCaGUUA-CCGCugCUGUCCga-CA- -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 14533 | 0.68 | 0.582374 |
Target: 5'- gCCACGUCGccGGCGccggacaacagcgACGAgaaacccgccccuacCGGGCUGa -3' miRNA: 3'- -GGUGCAGUuaCCGC-------------UGCU---------------GUCCGACa -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 2959 | 0.68 | 0.579032 |
Target: 5'- gCACGUCGAgcacgugauCGAUGACAGGUUGc -3' miRNA: 3'- gGUGCAGUUacc------GCUGCUGUCCGACa -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 32612 | 0.7 | 0.502674 |
Target: 5'- cCCGCGUCAAgggccGCGACGccGCGGucGCUGUc -3' miRNA: 3'- -GGUGCAGUUac---CGCUGC--UGUC--CGACA- -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 14818 | 0.7 | 0.502674 |
Target: 5'- cCCAuCGUCAagGGCGACGACcacgccaucuGGCg-- -3' miRNA: 3'- -GGU-GCAGUuaCCGCUGCUGu---------CCGaca -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 24627 | 0.7 | 0.461036 |
Target: 5'- gCACGUCGAaccacaUGGCGugcCGGCGGGCc-- -3' miRNA: 3'- gGUGCAGUU------ACCGCu--GCUGUCCGaca -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 16121 | 0.71 | 0.44091 |
Target: 5'- gCACGUCGGUGGCcccGACG-UAGGaCUGc -3' miRNA: 3'- gGUGCAGUUACCG---CUGCuGUCC-GACa -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 15560 | 0.73 | 0.339917 |
Target: 5'- uCCAgGUCAAUGGCGccgucagugACGACGcGCUGc -3' miRNA: 3'- -GGUgCAGUUACCGC---------UGCUGUcCGACa -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 32710 | 0.75 | 0.263592 |
Target: 5'- gCCGCGUgCAAUcaGGCGAUGGaGGGCUGa -3' miRNA: 3'- -GGUGCA-GUUA--CCGCUGCUgUCCGACa -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 8555 | 0.81 | 0.105565 |
Target: 5'- gCCGCGcCGAUGGCGggcaGCGACAGGCg-- -3' miRNA: 3'- -GGUGCaGUUACCGC----UGCUGUCCGaca -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 17657 | 0.82 | 0.083651 |
Target: 5'- gCCACGaUCuuGAUGGCGuCGGCGGGCUGg -3' miRNA: 3'- -GGUGC-AG--UUACCGCuGCUGUCCGACa -5' |
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26580 | 5' | -54.1 | NC_005357.1 | + | 29507 | 1.1 | 0.000918 |
Target: 5'- uCCACGUCAAUGGCGACGACAGGCUGUg -3' miRNA: 3'- -GGUGCAGUUACCGCUGCUGUCCGACA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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