miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26584 3' -54.1 NC_005357.1 + 37548 0.66 0.720412
Target:  5'- aCGAGGCc-GCCGUcGCCGCgcUGGg-- -3'
miRNA:   3'- aGUUCCGuaUGGCA-CGGCGa-ACCacc -5'
26584 3' -54.1 NC_005357.1 + 2033 0.66 0.709412
Target:  5'- ---cGGCAUACCG-GCCGCcucGGcgacgaUGGa -3'
miRNA:   3'- aguuCCGUAUGGCaCGGCGaa-CC------ACC- -5'
26584 3' -54.1 NC_005357.1 + 23703 0.66 0.709412
Target:  5'- uUCGAcGGCAUcCCGUGCCGCc------ -3'
miRNA:   3'- -AGUU-CCGUAuGGCACGGCGaaccacc -5'
26584 3' -54.1 NC_005357.1 + 8746 0.66 0.709412
Target:  5'- cCAGGGCGcGCgcguauucaCGUGCCGCUUcGGg-- -3'
miRNA:   3'- aGUUCCGUaUG---------GCACGGCGAA-CCacc -5'
26584 3' -54.1 NC_005357.1 + 18319 0.67 0.664732
Target:  5'- aCAcGGCAguaGCgGcGCaGCUUGGUGGg -3'
miRNA:   3'- aGUuCCGUa--UGgCaCGgCGAACCACC- -5'
26584 3' -54.1 NC_005357.1 + 16935 0.67 0.653452
Target:  5'- gUAGGGCAcgGCgccguccagcagCGUGCCGCgUUGGUauGGa -3'
miRNA:   3'- aGUUCCGUa-UG------------GCACGGCG-AACCA--CC- -5'
26584 3' -54.1 NC_005357.1 + 320 0.67 0.630841
Target:  5'- cCAGGGCGUGCCGUaCCGgg-GGUc- -3'
miRNA:   3'- aGUUCCGUAUGGCAcGGCgaaCCAcc -5'
26584 3' -54.1 NC_005357.1 + 9192 0.68 0.596959
Target:  5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3'
miRNA:   3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5'
26584 3' -54.1 NC_005357.1 + 9144 0.68 0.596959
Target:  5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3'
miRNA:   3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5'
26584 3' -54.1 NC_005357.1 + 9096 0.68 0.596959
Target:  5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3'
miRNA:   3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5'
26584 3' -54.1 NC_005357.1 + 9000 0.68 0.596959
Target:  5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3'
miRNA:   3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5'
26584 3' -54.1 NC_005357.1 + 9048 0.68 0.596959
Target:  5'- cCAGcGGUG-GCCGUGCCGCgauagccagcGGUGGc -3'
miRNA:   3'- aGUU-CCGUaUGGCACGGCGaa--------CCACC- -5'
26584 3' -54.1 NC_005357.1 + 1980 0.69 0.530282
Target:  5'- -gAAGGCAcGCUGUagGCCGCgaGGUcGGa -3'
miRNA:   3'- agUUCCGUaUGGCA--CGGCGaaCCA-CC- -5'
26584 3' -54.1 NC_005357.1 + 24639 0.69 0.508629
Target:  5'- aCAuGGCGUGCCGgcggGCCaGgaUGGUGu -3'
miRNA:   3'- aGUuCCGUAUGGCa---CGG-CgaACCACc -5'
26584 3' -54.1 NC_005357.1 + 29260 0.7 0.456267
Target:  5'- aUAAGGCcgGCCgGUGUCGg--GGUGGa -3'
miRNA:   3'- aGUUCCGuaUGG-CACGGCgaaCCACC- -5'
26584 3' -54.1 NC_005357.1 + 4665 0.71 0.416542
Target:  5'- gUCAAGGUcgAUGCCGUagguaGCCGCcccGGUGa -3'
miRNA:   3'- -AGUUCCG--UAUGGCA-----CGGCGaa-CCACc -5'
26584 3' -54.1 NC_005357.1 + 40400 0.71 0.397488
Target:  5'- cCGAGGCG-GCCGguaUGCCGgUgcUGGUGGc -3'
miRNA:   3'- aGUUCCGUaUGGC---ACGGCgA--ACCACC- -5'
26584 3' -54.1 NC_005357.1 + 30548 0.71 0.394679
Target:  5'- aUCGcGGGUcuuuGUGCCG-GCCGCUguagaugcggcagaUGGUGGg -3'
miRNA:   3'- -AGU-UCCG----UAUGGCaCGGCGA--------------ACCACC- -5'
26584 3' -54.1 NC_005357.1 + 15262 0.73 0.327104
Target:  5'- gUCGAGGCAUcCgCGUGCgGCgcgUGG-GGg -3'
miRNA:   3'- -AGUUCCGUAuG-GCACGgCGa--ACCaCC- -5'
26584 3' -54.1 NC_005357.1 + 3718 0.73 0.318984
Target:  5'- cUCGuGGCGc-CCGUGCCGUUcacgccggUGGUGGg -3'
miRNA:   3'- -AGUuCCGUauGGCACGGCGA--------ACCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.