miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26584 5' -53.1 NC_005357.1 + 10726 0.67 0.638497
Target:  5'- cGCgGCGGGCuggUCAGgcGgUGCUGCAg -3'
miRNA:   3'- cCGgUGUUCGu--GGUCauUgACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 5362 0.67 0.637341
Target:  5'- uGGCCGCcuGCACCGcgcccaggguuauGUcACUGgUGCg -3'
miRNA:   3'- -CCGGUGuuCGUGGU-------------CAuUGACgACGu -5'
26584 5' -53.1 NC_005357.1 + 4205 0.67 0.626929
Target:  5'- uGGCCGCGAGCAC--GUcGCgGCUuGCGg -3'
miRNA:   3'- -CCGGUGUUCGUGguCAuUGaCGA-CGU- -5'
26584 5' -53.1 NC_005357.1 + 37085 0.67 0.626929
Target:  5'- cGGCCACGcAGCGCgAugccaUGCUGCGc -3'
miRNA:   3'- -CCGGUGU-UCGUGgUcauugACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 19716 0.67 0.625772
Target:  5'- uGGCCGagcaaacCGAGCGCa---AACUGCUGCu -3'
miRNA:   3'- -CCGGU-------GUUCGUGgucaUUGACGACGu -5'
26584 5' -53.1 NC_005357.1 + 25830 0.68 0.592297
Target:  5'- gGGCCGCcguuGGCGCCGGUcaguuccaUGCUGg- -3'
miRNA:   3'- -CCGGUGu---UCGUGGUCAuug-----ACGACgu -5'
26584 5' -53.1 NC_005357.1 + 5402 0.68 0.592297
Target:  5'- cGCCGCGAGCACCuu---CUGCguacGCu -3'
miRNA:   3'- cCGGUGUUCGUGGucauuGACGa---CGu -5'
26584 5' -53.1 NC_005357.1 + 8652 0.68 0.580814
Target:  5'- aGGCCGCGccGUACucgcugugugCAGcGGCUGCUGCGc -3'
miRNA:   3'- -CCGGUGUu-CGUG----------GUCaUUGACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 28405 0.68 0.569378
Target:  5'- cGGCgGCGcGGCGCCAGUAGaUGcCUGUc -3'
miRNA:   3'- -CCGgUGU-UCGUGGUCAUUgAC-GACGu -5'
26584 5' -53.1 NC_005357.1 + 31289 0.69 0.546683
Target:  5'- cGGCC-C-AGCAgCAGgccgAACUGCUcGCAc -3'
miRNA:   3'- -CCGGuGuUCGUgGUCa---UUGACGA-CGU- -5'
26584 5' -53.1 NC_005357.1 + 11092 0.69 0.546683
Target:  5'- cGCgCGCGAGCACCuuGUcGGCUGCgGCc -3'
miRNA:   3'- cCG-GUGUUCGUGGu-CA-UUGACGaCGu -5'
26584 5' -53.1 NC_005357.1 + 13618 0.69 0.535443
Target:  5'- uGCCGacAGCAUCGGUAGCgGCaGCAa -3'
miRNA:   3'- cCGGUguUCGUGGUCAUUGaCGaCGU- -5'
26584 5' -53.1 NC_005357.1 + 17340 0.69 0.535443
Target:  5'- -cCCAC-GGCGCCGGgcGC-GCUGCGc -3'
miRNA:   3'- ccGGUGuUCGUGGUCauUGaCGACGU- -5'
26584 5' -53.1 NC_005357.1 + 15563 0.69 0.524285
Target:  5'- aGGUCAauGGCGCCgucAGUGACgacgcGCUGCGg -3'
miRNA:   3'- -CCGGUguUCGUGG---UCAUUGa----CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 26203 0.7 0.502245
Target:  5'- uGCCGCu--CACCgAGUuGCUGCUGCu -3'
miRNA:   3'- cCGGUGuucGUGG-UCAuUGACGACGu -5'
26584 5' -53.1 NC_005357.1 + 27444 0.7 0.48062
Target:  5'- cGGCCGCAGGC-CCuGgcGCUGguaUGCc -3'
miRNA:   3'- -CCGGUGUUCGuGGuCauUGACg--ACGu -5'
26584 5' -53.1 NC_005357.1 + 40196 0.7 0.469979
Target:  5'- cGGCCAC--GCGCCGc---CUGCUGCGc -3'
miRNA:   3'- -CCGGUGuuCGUGGUcauuGACGACGU- -5'
26584 5' -53.1 NC_005357.1 + 17997 0.7 0.469979
Target:  5'- aGGCCGCGcgcGGCACCGacaaaucgGGCcgGCUGCGc -3'
miRNA:   3'- -CCGGUGU---UCGUGGUca------UUGa-CGACGU- -5'
26584 5' -53.1 NC_005357.1 + 270 0.7 0.459458
Target:  5'- cGCUugAGGCAcggcguCCAGUAGCUGCgccggaagGCGc -3'
miRNA:   3'- cCGGugUUCGU------GGUCAUUGACGa-------CGU- -5'
26584 5' -53.1 NC_005357.1 + 35179 0.71 0.418688
Target:  5'- aGGCCgGCGAcaucggcccGCGCCAGUGGCcgaaGUUGCAg -3'
miRNA:   3'- -CCGG-UGUU---------CGUGGUCAUUGa---CGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.