miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26585 3' -49.6 NC_005357.1 + 473 0.67 0.864561
Target:  5'- ----gGCGCUGuCGCggUCGGAUGc- -3'
miRNA:   3'- uuauaCGCGACuGCGuaAGUCUACcc -5'
26585 3' -49.6 NC_005357.1 + 35877 0.68 0.817774
Target:  5'- --gAUGCGCUGACGCcuggcgAUUCGGGc--- -3'
miRNA:   3'- uuaUACGCGACUGCG------UAAGUCUaccc -5'
26585 3' -49.6 NC_005357.1 + 7179 0.7 0.685822
Target:  5'- ----cGCGCUGACGCccugacgCAGccGGGa -3'
miRNA:   3'- uuauaCGCGACUGCGuaa----GUCuaCCC- -5'
26585 3' -49.6 NC_005357.1 + 11706 0.84 0.122104
Target:  5'- --aAUGCGUUGACGCAUUCcGAUGGa -3'
miRNA:   3'- uuaUACGCGACUGCGUAAGuCUACCc -5'
26585 3' -49.6 NC_005357.1 + 31749 0.87 0.072643
Target:  5'- aAAUAUGCGCUGACGCAUUgAcAUGGGc -3'
miRNA:   3'- -UUAUACGCGACUGCGUAAgUcUACCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.