miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26586 5' -60.7 NC_005357.1 + 25707 0.66 0.398916
Target:  5'- gCUCAUaccaGCCCCG-CGGCGgGGUCGUc -3'
miRNA:   3'- -GAGUAgc--CGGGGCgGUUGUgCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 29351 0.66 0.364135
Target:  5'- -gCGUggaGGCCgagCGCCAAUucaacaugcagACGGCCGCa -3'
miRNA:   3'- gaGUAg--CCGGg--GCGGUUG-----------UGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 20176 0.67 0.347549
Target:  5'- ----aCGGCCggcgaauaCGCCAuCGCGGCCGa -3'
miRNA:   3'- gaguaGCCGGg-------GCGGUuGUGCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 7652 0.67 0.33946
Target:  5'- -aCGcCGGCUCCuuGCCGuACACGcGCCGUu -3'
miRNA:   3'- gaGUaGCCGGGG--CGGU-UGUGC-CGGCG- -5'
26586 5' -60.7 NC_005357.1 + 17435 0.67 0.316021
Target:  5'- gUCGUCGGCCCCcuuuguGCUggUGggUGGgCGCg -3'
miRNA:   3'- gAGUAGCCGGGG------CGGuuGU--GCCgGCG- -5'
26586 5' -60.7 NC_005357.1 + 23962 0.67 0.316021
Target:  5'- --aAUCGGCCgacgCCGCCGGC---GCCGCg -3'
miRNA:   3'- gagUAGCCGG----GGCGGUUGugcCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 39568 0.67 0.323696
Target:  5'- -gCAU-GGCUCUGCCAACgcuACGGCUugGCg -3'
miRNA:   3'- gaGUAgCCGGGGCGGUUG---UGCCGG--CG- -5'
26586 5' -60.7 NC_005357.1 + 29579 0.67 0.323696
Target:  5'- gUCAggUCGGCCgCGCCcaggcGCGCGGuUUGCc -3'
miRNA:   3'- gAGU--AGCCGGgGCGGu----UGUGCC-GGCG- -5'
26586 5' -60.7 NC_005357.1 + 40369 0.67 0.315261
Target:  5'- gUCAagcuacaGGCCCuugaauccaucguCGCCGAgGCGGCCGg -3'
miRNA:   3'- gAGUag-----CCGGG-------------GCGGUUgUGCCGGCg -5'
26586 5' -60.7 NC_005357.1 + 3754 0.67 0.316021
Target:  5'- -aCGUCGGUgCCGCCGcuggacguaGCcuCGGUCGUg -3'
miRNA:   3'- gaGUAGCCGgGGCGGU---------UGu-GCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 12289 0.67 0.323696
Target:  5'- ----cUGGCCCagcguGCCGGCuACGGCgGCg -3'
miRNA:   3'- gaguaGCCGGGg----CGGUUG-UGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 1125 0.67 0.330722
Target:  5'- -gCAUCGGCCcgguguaaCCGUUAGCucgcgcuACGGCgGCg -3'
miRNA:   3'- gaGUAGCCGG--------GGCGGUUG-------UGCCGgCG- -5'
26586 5' -60.7 NC_005357.1 + 27451 0.67 0.331509
Target:  5'- -----aGGCCCUggcgcugguauGCCAGCGCG-CCGCg -3'
miRNA:   3'- gaguagCCGGGG-----------CGGUUGUGCcGGCG- -5'
26586 5' -60.7 NC_005357.1 + 29733 0.67 0.331509
Target:  5'- aUCAaaUCGGCCaCGCCGuagaacucgGCcuCGGCUGCu -3'
miRNA:   3'- gAGU--AGCCGGgGCGGU---------UGu-GCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 8859 0.67 0.323696
Target:  5'- -gCGUUGGCCUcgguCGCCAcgaaGCGGgCGCg -3'
miRNA:   3'- gaGUAGCCGGG----GCGGUug--UGCCgGCG- -5'
26586 5' -60.7 NC_005357.1 + 41550 0.67 0.347549
Target:  5'- -cCAUgcUGGCCCUGCuguuCAACuCGGCuCGCa -3'
miRNA:   3'- gaGUA--GCCGGGGCG----GUUGuGCCG-GCG- -5'
26586 5' -60.7 NC_005357.1 + 32617 0.67 0.33946
Target:  5'- gUCAagGGCCgCGaCGcCGCGGUCGCu -3'
miRNA:   3'- gAGUagCCGGgGCgGUuGUGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 4507 0.67 0.347549
Target:  5'- uCUCAcgggCGGCgCCCGUgAACguggcgugcuggGCGGUCGUg -3'
miRNA:   3'- -GAGUa---GCCG-GGGCGgUUG------------UGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 13032 0.67 0.347549
Target:  5'- -gCGaCGGCCUCGUCAucGCguugcuugaguGCGGCCGUc -3'
miRNA:   3'- gaGUaGCCGGGGCGGU--UG-----------UGCCGGCG- -5'
26586 5' -60.7 NC_005357.1 + 13626 0.67 0.323696
Target:  5'- -gCAUCGGUagCGgcagcaaguCCGGCGCGGCCGUc -3'
miRNA:   3'- gaGUAGCCGggGC---------GGUUGUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.