miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26587 5' -50.4 NC_005357.1 + 13579 0.67 0.861271
Target:  5'- uGAACgcgCGCuCGCCAUCGCucACcuGGa -3'
miRNA:   3'- gCUUGa--GUG-GUGGUGGCGuuUGuuCC- -5'
26587 5' -50.4 NC_005357.1 + 32825 0.67 0.85608
Target:  5'- uCGGACUaCACCagccgcaacggcuucGCCugGCCGCAGACGGucGGc -3'
miRNA:   3'- -GCUUGA-GUGG---------------UGG--UGGCGUUUGUU--CC- -5'
26587 5' -50.4 NC_005357.1 + 39909 0.67 0.852568
Target:  5'- uCGAACUgACCGCaCGCCcagccCGAACGGGu -3'
miRNA:   3'- -GCUUGAgUGGUG-GUGGc----GUUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 32699 0.67 0.852568
Target:  5'- cCGAcguGCUCGCCGCgUGCaaucagGCGAugGAGGg -3'
miRNA:   3'- -GCU---UGAGUGGUG-GUGg-----CGUUugUUCC- -5'
26587 5' -50.4 NC_005357.1 + 38693 0.67 0.843613
Target:  5'- cCGAcguGCcCACCACCGgCGUGAACGgcacGGGc -3'
miRNA:   3'- -GCU---UGaGUGGUGGUgGCGUUUGU----UCC- -5'
26587 5' -50.4 NC_005357.1 + 4564 0.67 0.843613
Target:  5'- cCGAAgUCGCCGaggCGCUGCucggugcgccAGGCGAGGa -3'
miRNA:   3'- -GCUUgAGUGGUg--GUGGCG----------UUUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 32306 0.67 0.843613
Target:  5'- gCGAcCUCAUCGCCGCCau---CAAGGc -3'
miRNA:   3'- -GCUuGAGUGGUGGUGGcguuuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 18924 0.67 0.843613
Target:  5'- gCGcGCUCGCggaACUGCCGCAGGuCGAGa -3'
miRNA:   3'- -GCuUGAGUGg--UGGUGGCGUUU-GUUCc -5'
26587 5' -50.4 NC_005357.1 + 31304 0.68 0.834415
Target:  5'- cCGAacuGCUCGCacguuugaACCaauugGCCGCAgccGACAAGGu -3'
miRNA:   3'- -GCU---UGAGUGg-------UGG-----UGGCGU---UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 34820 0.68 0.834415
Target:  5'- -uGAC-CAUCACCACgGCAGACGGa- -3'
miRNA:   3'- gcUUGaGUGGUGGUGgCGUUUGUUcc -5'
26587 5' -50.4 NC_005357.1 + 19937 0.68 0.834415
Target:  5'- cCGAACUC-CUugUcgGCCGUGGACAGGc -3'
miRNA:   3'- -GCUUGAGuGGugG--UGGCGUUUGUUCc -5'
26587 5' -50.4 NC_005357.1 + 26735 0.68 0.834415
Target:  5'- cCGGGC-CACCGCCagcgcgcccGCUGCGAuuccAUAAGGc -3'
miRNA:   3'- -GCUUGaGUGGUGG---------UGGCGUU----UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 42187 0.68 0.834415
Target:  5'- gGGAUUCGCUACCGCCgGCccuACAAc- -3'
miRNA:   3'- gCUUGAGUGGUGGUGG-CGuu-UGUUcc -5'
26587 5' -50.4 NC_005357.1 + 16955 0.68 0.824984
Target:  5'- aCGAGCgCGCC-CCAUCGUGAggcGCGAGa -3'
miRNA:   3'- -GCUUGaGUGGuGGUGGCGUU---UGUUCc -5'
26587 5' -50.4 NC_005357.1 + 19988 0.68 0.815331
Target:  5'- cCGAACUgGacgaguCCGCCGCCGU---CAAGGc -3'
miRNA:   3'- -GCUUGAgU------GGUGGUGGCGuuuGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 1314 0.68 0.815331
Target:  5'- aGGGCgacgGCCACCagGCCGaCAAgcGCGAGGa -3'
miRNA:   3'- gCUUGag--UGGUGG--UGGC-GUU--UGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 38259 0.68 0.815331
Target:  5'- -uGGCUaCACCucgACCACgGCGcGCAAGGu -3'
miRNA:   3'- gcUUGA-GUGG---UGGUGgCGUuUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 40201 0.68 0.815331
Target:  5'- aCGcGC-CGCCugCugCGCGuggugcuacccGACGAGGg -3'
miRNA:   3'- -GCuUGaGUGGugGugGCGU-----------UUGUUCC- -5'
26587 5' -50.4 NC_005357.1 + 30727 0.68 0.805468
Target:  5'- aGAcCUCGCCAagcggcuaaguCCGCCGCAgucuGACAccuuGGGc -3'
miRNA:   3'- gCUuGAGUGGU-----------GGUGGCGU----UUGU----UCC- -5'
26587 5' -50.4 NC_005357.1 + 17245 0.68 0.795407
Target:  5'- gCGuGCUCAugacauucaacCCGCCgACCaCGAGCGAGGg -3'
miRNA:   3'- -GCuUGAGU-----------GGUGG-UGGcGUUUGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.