miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26588 5' -58.6 NC_005357.1 + 8034 0.67 0.396539
Target:  5'- -aUAGGGCCGcCGUCCUuGCcGCCGUc -3'
miRNA:   3'- uaGUUCCGGCcGCAGGGcUGuUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 12803 0.67 0.391105
Target:  5'- cAUCAAGcCCGGCcacaagcgCCCGGCGcuggacaacuggcaaACCGCg -3'
miRNA:   3'- -UAGUUCcGGCCGca------GGGCUGU---------------UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 29876 0.67 0.387509
Target:  5'- -gCGAGGCCGGCaagaaauUCaCCGAC-GCCGa -3'
miRNA:   3'- uaGUUCCGGCCGc------AG-GGCUGuUGGCg -5'
26588 5' -58.6 NC_005357.1 + 1757 0.67 0.387509
Target:  5'- gGUCAuGGCCGGCcugcgCCUGGCGcgucggGCCGa -3'
miRNA:   3'- -UAGUuCCGGCCGca---GGGCUGU------UGGCg -5'
26588 5' -58.6 NC_005357.1 + 17095 0.67 0.387509
Target:  5'- ----uGGCCGGCcuggacaaUCCCGGCGACgaGCg -3'
miRNA:   3'- uaguuCCGGCCGc-------AGGGCUGUUGg-CG- -5'
26588 5' -58.6 NC_005357.1 + 25998 0.67 0.387509
Target:  5'- uUCAAcgccGCCGGCGauuacCCCG-CGGCCGUg -3'
miRNA:   3'- uAGUUc---CGGCCGCa----GGGCuGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 14536 0.67 0.387509
Target:  5'- -aCGucGCCGGCG-CCgGACAACaGCg -3'
miRNA:   3'- uaGUucCGGCCGCaGGgCUGUUGgCG- -5'
26588 5' -58.6 NC_005357.1 + 24501 0.67 0.382157
Target:  5'- aGUCGuagGGGCUGGCGcccacgccgaucacgUCCaggugGAUGACCGCg -3'
miRNA:   3'- -UAGU---UCCGGCCGC---------------AGGg----CUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 733 0.67 0.378616
Target:  5'- aGUCGAGcGCCuGGCGgaugaCCGACAcguaguuguucACCGUc -3'
miRNA:   3'- -UAGUUC-CGG-CCGCag---GGCUGU-----------UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 10001 0.68 0.36986
Target:  5'- gGUCGaaAGuGCCGcGCG-CCCGGCccCCGCc -3'
miRNA:   3'- -UAGU--UC-CGGC-CGCaGGGCUGuuGGCG- -5'
26588 5' -58.6 NC_005357.1 + 23766 0.68 0.361244
Target:  5'- ---cAGGCCGGgGg-CgGGCGACCGCc -3'
miRNA:   3'- uaguUCCGGCCgCagGgCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 13853 0.68 0.361244
Target:  5'- -aCGcuGCCGGUGg-CCGACGugCGCg -3'
miRNA:   3'- uaGUucCGGCCGCagGGCUGUugGCG- -5'
26588 5' -58.6 NC_005357.1 + 13074 0.68 0.356142
Target:  5'- -gCAAGGCCaccGGCGcgUgguucgaggacuuggCCGGCGACCGCc -3'
miRNA:   3'- uaGUUCCGG---CCGCa-G---------------GGCUGUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 29745 0.68 0.352769
Target:  5'- uAUCAAGGCgGGC--CUCGACAcgcGCCuGCg -3'
miRNA:   3'- -UAGUUCCGgCCGcaGGGCUGU---UGG-CG- -5'
26588 5' -58.6 NC_005357.1 + 14597 0.68 0.344435
Target:  5'- -gCGcGGCCGGCGcCaCCGcggGCAGCgCGCg -3'
miRNA:   3'- uaGUuCCGGCCGCaG-GGC---UGUUG-GCG- -5'
26588 5' -58.6 NC_005357.1 + 33145 0.68 0.344435
Target:  5'- aGUCAAugcgcaGCCGGUGUaCCgGGcCGACCGCu -3'
miRNA:   3'- -UAGUUc-----CGGCCGCA-GGgCU-GUUGGCG- -5'
26588 5' -58.6 NC_005357.1 + 4823 0.68 0.331398
Target:  5'- gGUCGGGGCCGGCGcCgUCGucgaauucacggaaaGCGGCCaGCu -3'
miRNA:   3'- -UAGUUCCGGCCGCaG-GGC---------------UGUUGG-CG- -5'
26588 5' -58.6 NC_005357.1 + 13308 0.68 0.331398
Target:  5'- -cCGGGGCCGGCGUuguaggcggcguaggCUuuCGGCAggucGCCGCc -3'
miRNA:   3'- uaGUUCCGGCCGCA---------------GG--GCUGU----UGGCG- -5'
26588 5' -58.6 NC_005357.1 + 36667 0.68 0.328196
Target:  5'- gGUCAAGGCCcuGGCGcacucgcugCCCGGCG--CGCu -3'
miRNA:   3'- -UAGUUCCGG--CCGCa--------GGGCUGUugGCG- -5'
26588 5' -58.6 NC_005357.1 + 13599 0.69 0.320291
Target:  5'- -gCAAGuCCGGCcgcaaCCCGACGACgGCg -3'
miRNA:   3'- uaGUUCcGGCCGca---GGGCUGUUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.