miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26589 3' -53.2 NC_005357.1 + 37926 0.66 0.718611
Target:  5'- aAGCGCCugu--GgcGCCGCGCGCa-- -3'
miRNA:   3'- -UCGUGGcuuuuUuuCGGCGCGCGgug -5'
26589 3' -53.2 NC_005357.1 + 31726 0.66 0.718611
Target:  5'- aAGCaAUCGGcc-GAGGCCguGCGCGCUGCc -3'
miRNA:   3'- -UCG-UGGCUuuuUUUCGG--CGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 15279 0.66 0.718611
Target:  5'- cGGCGCgUGggGGAcuucGAGUgaUGCGCGCgGCg -3'
miRNA:   3'- -UCGUG-GCuuUUU----UUCG--GCGCGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 24266 0.66 0.717493
Target:  5'- cGCACUGAAAcAgggcuauuucggcAAGCUGCGCgaGCCGg -3'
miRNA:   3'- uCGUGGCUUUuU-------------UUCGGCGCG--CGGUg -5'
26589 3' -53.2 NC_005357.1 + 29156 0.66 0.715255
Target:  5'- cGGCGCUGAAAGAcgccaaggauggcaAcuGGCUG-GCGCUACu -3'
miRNA:   3'- -UCGUGGCUUUUU--------------U--UCGGCgCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 9186 0.66 0.714135
Target:  5'- uGGCGCCGucgacguuGGCCugcucggcgGCGCGgCGCa -3'
miRNA:   3'- -UCGUGGCuuuuuu--UCGG---------CGCGCgGUG- -5'
26589 3' -53.2 NC_005357.1 + 31662 0.66 0.707394
Target:  5'- --gGCCGAAGAAcugcGGGCCgaagucgaGCGCGCCc- -3'
miRNA:   3'- ucgUGGCUUUUU----UUCGG--------CGCGCGGug -5'
26589 3' -53.2 NC_005357.1 + 8321 0.66 0.707394
Target:  5'- cGCGCUGcucGGGGAAAGuuGCGCGUg-- -3'
miRNA:   3'- uCGUGGC---UUUUUUUCggCGCGCGgug -5'
26589 3' -53.2 NC_005357.1 + 29395 0.66 0.707394
Target:  5'- aAGCAacgCGAugacGAGGCCGU-CGCCACu -3'
miRNA:   3'- -UCGUg--GCUuuu-UUUCGGCGcGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 22822 0.66 0.707394
Target:  5'- uGGC-CCGAcuuc--GCCGCGCuGCCGa -3'
miRNA:   3'- -UCGuGGCUuuuuuuCGGCGCG-CGGUg -5'
26589 3' -53.2 NC_005357.1 + 4142 0.66 0.707394
Target:  5'- cGGCGCauaguGGAAGCCGCccaccuugcGCGCCGu -3'
miRNA:   3'- -UCGUGgcuuuUUUUCGGCG---------CGCGGUg -5'
26589 3' -53.2 NC_005357.1 + 31991 0.66 0.704013
Target:  5'- gGGCGCCauugccaagcuguuGGAAAugaaaaguggcGAGGCCaucgGCGCGCUGCa -3'
miRNA:   3'- -UCGUGG--------------CUUUU-----------UUUCGG----CGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 40157 0.66 0.700625
Target:  5'- cGGCACUGuacgcgaugaucgacAAGAAGauucauugcgcGGCCaCGCGCCGCc -3'
miRNA:   3'- -UCGUGGC---------------UUUUUU-----------UCGGcGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 34287 0.66 0.700625
Target:  5'- cAGCGCCGAcacccgcacgcccacAAccaacgccGGCCGCGCGgUGCa -3'
miRNA:   3'- -UCGUGGCU---------------UUuuu-----UCGGCGCGCgGUG- -5'
26589 3' -53.2 NC_005357.1 + 33641 0.66 0.69723
Target:  5'- cGGCgcgGCCGAcccaucgugcGCCGCGUGCUGCc -3'
miRNA:   3'- -UCG---UGGCUuuuuuu----CGGCGCGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 24031 0.66 0.696097
Target:  5'- -uCGCCGAcgu--GGCCGCcaccgGCGCCAUc -3'
miRNA:   3'- ucGUGGCUuuuuuUCGGCG-----CGCGGUG- -5'
26589 3' -53.2 NC_005357.1 + 18415 0.66 0.696097
Target:  5'- -uCGCUGAAuu--GGCCGaCGCGCCcACc -3'
miRNA:   3'- ucGUGGCUUuuuuUCGGC-GCGCGG-UG- -5'
26589 3' -53.2 NC_005357.1 + 18515 0.66 0.696097
Target:  5'- cGCcuauGCCGGcauGGAAGCCGCggGCGUgGCg -3'
miRNA:   3'- uCG----UGGCUuu-UUUUCGGCG--CGCGgUG- -5'
26589 3' -53.2 NC_005357.1 + 1692 0.66 0.696097
Target:  5'- aGGUAgUCGAGAAAuucGCCGUGgGCCGg -3'
miRNA:   3'- -UCGU-GGCUUUUUuu-CGGCGCgCGGUg -5'
26589 3' -53.2 NC_005357.1 + 10129 0.66 0.696097
Target:  5'- uGGCGgCGAu--GAGGUCGCGCaaCGCg -3'
miRNA:   3'- -UCGUgGCUuuuUUUCGGCGCGcgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.