Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26589 | 5' | -60.8 | NC_005357.1 | + | 14681 | 0.66 | 0.360546 |
Target: 5'- aCGAgGGCAGCGAgUUGCgCgaGgGCCUc -3' miRNA: 3'- -GCUgCCGUCGCU-GACGgGgaUgCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 41593 | 0.66 | 0.360546 |
Target: 5'- -cACGGuCGGCucGCUGUCUCUGCGCgCg -3' miRNA: 3'- gcUGCC-GUCGc-UGACGGGGAUGCGgG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 24740 | 0.66 | 0.35226 |
Target: 5'- --cCGGCccgAGUGGC-GCUucgCCUACGCCCa -3' miRNA: 3'- gcuGCCG---UCGCUGaCGG---GGAUGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 34392 | 0.67 | 0.344109 |
Target: 5'- gGACGGCGGCaagGACgGCggCCCUAUGUg- -3' miRNA: 3'- gCUGCCGUCG---CUGaCG--GGGAUGCGgg -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 38182 | 0.67 | 0.344109 |
Target: 5'- aCGGcCGGCAcCGACUacGCCaUCUACGUCUg -3' miRNA: 3'- -GCU-GCCGUcGCUGA--CGG-GGAUGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 30840 | 0.67 | 0.344109 |
Target: 5'- cCGGCGGcCAGcCGGCgGCCCUggGCGgCa -3' miRNA: 3'- -GCUGCC-GUC-GCUGaCGGGGa-UGCgGg -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 4923 | 0.67 | 0.344109 |
Target: 5'- aCGuCGGCAGCGA-UGCCCgCgACGgUCu -3' miRNA: 3'- -GCuGCCGUCGCUgACGGG-GaUGCgGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 7218 | 0.67 | 0.344109 |
Target: 5'- -cACGGCAGCauCUGCgCC-GCGCUCa -3' miRNA: 3'- gcUGCCGUCGcuGACGgGGaUGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 32471 | 0.67 | 0.344109 |
Target: 5'- cCGA-GGUGGgGGCgGCCgaUGCGCCCg -3' miRNA: 3'- -GCUgCCGUCgCUGaCGGggAUGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 33957 | 0.67 | 0.336095 |
Target: 5'- gCGuCGGCuGCGGCaucgcagGCCaCCUcgACGCCg -3' miRNA: 3'- -GCuGCCGuCGCUGa------CGG-GGA--UGCGGg -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 8130 | 0.67 | 0.336095 |
Target: 5'- --uCGGCGGUGACUucccaGCCCUUGcCGUUCa -3' miRNA: 3'- gcuGCCGUCGCUGA-----CGGGGAU-GCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 3699 | 0.67 | 0.336095 |
Target: 5'- -cACGGCGacGCG-CUGCCCCaugcgGCGCauCCg -3' miRNA: 3'- gcUGCCGU--CGCuGACGGGGa----UGCG--GG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 33883 | 0.67 | 0.335301 |
Target: 5'- cCGccauCGGC-GCGGCUGUCgagcguuucaucgCCUACGCCa -3' miRNA: 3'- -GCu---GCCGuCGCUGACGG-------------GGAUGCGGg -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 34151 | 0.67 | 0.320479 |
Target: 5'- --cCGGCAGCGug-GCCCUggaagccgaAUGCCCg -3' miRNA: 3'- gcuGCCGUCGCugaCGGGGa--------UGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 32932 | 0.67 | 0.320479 |
Target: 5'- uCGcACGGCGGaacaGGCUGgCaugACGCCCg -3' miRNA: 3'- -GC-UGCCGUCg---CUGACgGggaUGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 7895 | 0.67 | 0.318184 |
Target: 5'- gGGCGGC-GCGugcguagaucgccaGCUGCUCgUUGCGCUCg -3' miRNA: 3'- gCUGCCGuCGC--------------UGACGGG-GAUGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 37082 | 0.67 | 0.312877 |
Target: 5'- aGGCGGCcacgcAGCGcgaUGCCaugCUGCGCCa -3' miRNA: 3'- gCUGCCG-----UCGCug-ACGGg--GAUGCGGg -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 1157 | 0.67 | 0.312877 |
Target: 5'- aCGGCGGCGGUcAC-GCCCCacauagucuCGCCg -3' miRNA: 3'- -GCUGCCGUCGcUGaCGGGGau-------GCGGg -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 33077 | 0.67 | 0.312877 |
Target: 5'- gGuCGcGCAGCGACgcggcgGCCuacauCCU-CGCCCa -3' miRNA: 3'- gCuGC-CGUCGCUGa-----CGG-----GGAuGCGGG- -5' |
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26589 | 5' | -60.8 | NC_005357.1 | + | 27707 | 0.67 | 0.305412 |
Target: 5'- gCGcCGGCAGCGGCUcGCCgCCggucauggACuugaugagGCCCu -3' miRNA: 3'- -GCuGCCGUCGCUGA-CGG-GGa-------UG--------CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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