miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2659 3' -51.3 NC_001491.2 + 1451 0.66 0.990063
Target:  5'- cGGCGG-GGAGC-CUcggUGAUGGGCaGCa -3'
miRNA:   3'- aCCGCUaCCUUGcGAa--ACUGUCUG-CG- -5'
2659 3' -51.3 NC_001491.2 + 2216 0.69 0.940977
Target:  5'- aGGCG-UGGGAcCGCUUgGugAgGAUGCg -3'
miRNA:   3'- aCCGCuACCUU-GCGAAaCugU-CUGCG- -5'
2659 3' -51.3 NC_001491.2 + 3559 0.66 0.992328
Target:  5'- aGGCGGgagaggGGAucuCGCUggggUccaguccggggacGGCGGACGCc -3'
miRNA:   3'- aCCGCUa-----CCUu--GCGAa---A-------------CUGUCUGCG- -5'
2659 3' -51.3 NC_001491.2 + 5734 0.7 0.910124
Target:  5'- gUGGcCGGUGGcgggguuccgcggcgGGCGCUcggacGACGGGCGCc -3'
miRNA:   3'- -ACC-GCUACC---------------UUGCGAaa---CUGUCUGCG- -5'
2659 3' -51.3 NC_001491.2 + 9652 0.69 0.950072
Target:  5'- gGGCGAggucgggGGAaaGCGUgaaUGACAG-CGCc -3'
miRNA:   3'- aCCGCUa------CCU--UGCGaa-ACUGUCuGCG- -5'
2659 3' -51.3 NC_001491.2 + 9984 0.71 0.894476
Target:  5'- cGGgGAcgGGGACGgg--GGCGGGCGCg -3'
miRNA:   3'- aCCgCUa-CCUUGCgaaaCUGUCUGCG- -5'
2659 3' -51.3 NC_001491.2 + 10440 0.7 0.923762
Target:  5'- cGGCGGacgcagagcgcuacUGGGccGCGCUacucaacaUGGCGGGCGCc -3'
miRNA:   3'- aCCGCU--------------ACCU--UGCGAa-------ACUGUCUGCG- -5'
2659 3' -51.3 NC_001491.2 + 12551 0.71 0.887538
Target:  5'- gGGCGcgGGAGCGCgcgaGCgccgccucgGGGCGCg -3'
miRNA:   3'- aCCGCuaCCUUGCGaaacUG---------UCUGCG- -5'
2659 3' -51.3 NC_001491.2 + 18475 0.66 0.992435
Target:  5'- gGGUGGUGGAAacucCUUUGGCcuauccuGGCGUc -3'
miRNA:   3'- aCCGCUACCUUgc--GAAACUGu------CUGCG- -5'
2659 3' -51.3 NC_001491.2 + 18652 0.71 0.887538
Target:  5'- gGGCGGUGGcACGCUUcuGCAuacACGCc -3'
miRNA:   3'- aCCGCUACCuUGCGAAacUGUc--UGCG- -5'
2659 3' -51.3 NC_001491.2 + 19638 0.7 0.907616
Target:  5'- uUGGCGGUGGuGugGUcaUUGAUGGugGUa -3'
miRNA:   3'- -ACCGCUACC-UugCGa-AACUGUCugCG- -5'
2659 3' -51.3 NC_001491.2 + 25461 0.67 0.981584
Target:  5'- gGGCGAggaGGAAccCGCg--GACGaGCGCu -3'
miRNA:   3'- aCCGCUa--CCUU--GCGaaaCUGUcUGCG- -5'
2659 3' -51.3 NC_001491.2 + 26741 0.76 0.676516
Target:  5'- gUGGCGggGGAACaGCUcgGGCucGGCGCc -3'
miRNA:   3'- -ACCGCuaCCUUG-CGAaaCUGu-CUGCG- -5'
2659 3' -51.3 NC_001491.2 + 27952 0.72 0.856635
Target:  5'- cGGCGAgcgcuuuuggUGGGACGCUcacccuuggggggUUGGCGcuugcGGCGCu -3'
miRNA:   3'- aCCGCU----------ACCUUGCGA-------------AACUGU-----CUGCG- -5'
2659 3' -51.3 NC_001491.2 + 28537 0.7 0.924884
Target:  5'- aGGCGGUucacaucGGGGCGCcacGGCGgGGCGCa -3'
miRNA:   3'- aCCGCUA-------CCUUGCGaaaCUGU-CUGCG- -5'
2659 3' -51.3 NC_001491.2 + 32015 0.69 0.940977
Target:  5'- cGGCGGUgGGGACGCggccGACccGGuCGCc -3'
miRNA:   3'- aCCGCUA-CCUUGCGaaa-CUG--UCuGCG- -5'
2659 3' -51.3 NC_001491.2 + 43778 0.69 0.940977
Target:  5'- gGGCGA-GGAcGCGCUgcgaccGCAGACGa -3'
miRNA:   3'- aCCGCUaCCU-UGCGAaac---UGUCUGCg -5'
2659 3' -51.3 NC_001491.2 + 44154 0.71 0.90117
Target:  5'- cGGCGAaGGAcagacccaGCGCggcGGCAGcCGCg -3'
miRNA:   3'- aCCGCUaCCU--------UGCGaaaCUGUCuGCG- -5'
2659 3' -51.3 NC_001491.2 + 46580 0.69 0.950072
Target:  5'- aGGCGcucaccuccuuGUGGGACGagu--ACAGGCGCg -3'
miRNA:   3'- aCCGC-----------UACCUUGCgaaacUGUCUGCG- -5'
2659 3' -51.3 NC_001491.2 + 53883 0.68 0.961876
Target:  5'- gGGcCGcUGGAgGCGCa--GGCAGGCGCc -3'
miRNA:   3'- aCC-GCuACCU-UGCGaaaCUGUCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.