miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26590 3' -62.3 NC_005357.1 + 14267 0.67 0.230832
Target:  5'- uGGuugGCcugcugcaccaUGCUGUCGGCGAUGCgGCc -3'
miRNA:   3'- uCCua-CG-----------ACGGCGGCCGCUACGgCGa -5'
26590 3' -62.3 NC_005357.1 + 8285 0.68 0.213579
Target:  5'- cAGGGccacGCUGCCggggcagugcaGCCaGCGGUGCgCGCUg -3'
miRNA:   3'- -UCCUa---CGACGG-----------CGGcCGCUACG-GCGA- -5'
26590 3' -62.3 NC_005357.1 + 39591 0.68 0.213579
Target:  5'- -uGGUGCUGgCGCCGcuGCGcgugGCCGCg -3'
miRNA:   3'- ucCUACGACgGCGGC--CGCua--CGGCGa -5'
26590 3' -62.3 NC_005357.1 + 9344 0.68 0.213579
Target:  5'- gAGGAUGUagGCCGCCG-CGucGCUGCg -3'
miRNA:   3'- -UCCUACGa-CGGCGGCcGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 14994 0.68 0.213579
Target:  5'- cAGGGccUGCgGCCGCCGggcGCGGUGCgccaggCGCg -3'
miRNA:   3'- -UCCU--ACGaCGGCGGC---CGCUACG------GCGa -5'
26590 3' -62.3 NC_005357.1 + 16182 0.68 0.208078
Target:  5'- cGGGUGCccgUGCCuUCGGCGAcGCgCGCa -3'
miRNA:   3'- uCCUACG---ACGGcGGCCGCUaCG-GCGa -5'
26590 3' -62.3 NC_005357.1 + 19310 0.69 0.182384
Target:  5'- cAGGAgccguuaccGCUGUCGCCgugGGCGccGCCGUUg -3'
miRNA:   3'- -UCCUa--------CGACGGCGG---CCGCuaCGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 30202 0.69 0.182384
Target:  5'- ----cGCUGuuGCCGGUG-UGCUGCg -3'
miRNA:   3'- uccuaCGACggCGGCCGCuACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 37996 0.69 0.177594
Target:  5'- uGGcGGUGUUGCgGCCGGguacgaccuaCGAcUGCCGCa -3'
miRNA:   3'- -UC-CUACGACGgCGGCC----------GCU-ACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 16805 0.69 0.177594
Target:  5'- uGGAcGC-GCUGCUGGCGAccgcGCCGCc -3'
miRNA:   3'- uCCUaCGaCGGCGGCCGCUa---CGGCGa -5'
26590 3' -62.3 NC_005357.1 + 21733 0.69 0.163889
Target:  5'- cGGAUGCcaCCGuuGgGCGcgGCCGCg -3'
miRNA:   3'- uCCUACGacGGCggC-CGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 33198 0.69 0.163889
Target:  5'- uGGAa-CUGCCGCCgGGCGc-GCCGCa -3'
miRNA:   3'- uCCUacGACGGCGG-CCGCuaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 32868 0.7 0.153618
Target:  5'- cGGAUGCUcGCCaCCGGCGAgcagaucgcacugGCCGa- -3'
miRNA:   3'- uCCUACGA-CGGcGGCCGCUa------------CGGCga -5'
26590 3' -62.3 NC_005357.1 + 29111 0.7 0.151143
Target:  5'- cGGGAcuUGCUGCCGgucacgCGcGCGAgGCCGCa -3'
miRNA:   3'- -UCCU--ACGACGGCg-----GC-CGCUaCGGCGa -5'
26590 3' -62.3 NC_005357.1 + 14629 0.7 0.139304
Target:  5'- gAGGAcgUGCUGCgGCUGcGCGgcGCgCGCUu -3'
miRNA:   3'- -UCCU--ACGACGgCGGC-CGCuaCG-GCGA- -5'
26590 3' -62.3 NC_005357.1 + 31504 0.7 0.13555
Target:  5'- -----cUUGCCGCCGGCG-UGCUGCUg -3'
miRNA:   3'- uccuacGACGGCGGCCGCuACGGCGA- -5'
26590 3' -62.3 NC_005357.1 + 41389 0.71 0.13189
Target:  5'- cGGcgacAUGCUGCCGCCGGCcguggccuuccaGGUGUucgaCGCUg -3'
miRNA:   3'- uCC----UACGACGGCGGCCG------------CUACG----GCGA- -5'
26590 3' -62.3 NC_005357.1 + 28804 0.71 0.13189
Target:  5'- cGGAcuUGCUGCCGCUacCGAUGCUGUc -3'
miRNA:   3'- uCCU--ACGACGGCGGccGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 970 0.71 0.128321
Target:  5'- cGGcagcuUGCagccacuugGCCGCCuGGCGGUGCCGUg -3'
miRNA:   3'- uCCu----ACGa--------CGGCGG-CCGCUACGGCGa -5'
26590 3' -62.3 NC_005357.1 + 37547 0.72 0.10752
Target:  5'- aAGGAcgcaugauUGCgugGCuCGCCGGCGAggauuggaagcugGCCGCUu -3'
miRNA:   3'- -UCCU--------ACGa--CG-GCGGCCGCUa------------CGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.