Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26590 | 5' | -58.1 | NC_005357.1 | + | 10446 | 0.71 | 0.259527 |
Target: 5'- aCAGGACGCUGgCGucgaguuCGCguuccGUGACCAg -3' miRNA: 3'- aGUCCUGUGGCgGCu------GCGa----CACUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 8650 | 0.71 | 0.252946 |
Target: 5'- cCAGGccGCGCCGUacuCGCUGUGugCAg -3' miRNA: 3'- aGUCC--UGUGGCGgcuGCGACACugGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 30133 | 0.71 | 0.240197 |
Target: 5'- ---cGACGCCGCCGuagccggcACGCUG-GGCCAg -3' miRNA: 3'- agucCUGUGGCGGC--------UGCGACaCUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 40968 | 0.71 | 0.238952 |
Target: 5'- cCAGGAgGCCGCCGAcCGCgccgucaagaagGUGuuuGCCAu -3' miRNA: 3'- aGUCCUgUGGCGGCU-GCGa-----------CAC---UGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 37430 | 0.71 | 0.234026 |
Target: 5'- --cGGACugCGCCGACcuGCUGUucGCCAa -3' miRNA: 3'- aguCCUGugGCGGCUG--CGACAc-UGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 37511 | 0.73 | 0.189339 |
Target: 5'- gCGGGcauCGCUGCCGACGUUuccaccGUGGCCGa -3' miRNA: 3'- aGUCCu--GUGGCGGCUGCGA------CACUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 38976 | 0.73 | 0.169935 |
Target: 5'- uUCGGGGCG-CG-CGGCGuCUGUGACCAc -3' miRNA: 3'- -AGUCCUGUgGCgGCUGC-GACACUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 14993 | 0.74 | 0.16537 |
Target: 5'- cCAGGGCcugcgGCCGCCgGGCGCgGUGcGCCAg -3' miRNA: 3'- aGUCCUG-----UGGCGG-CUGCGaCAC-UGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 30172 | 0.74 | 0.160915 |
Target: 5'- cCAGGACacuACCGCCGAuccguucgaugcCGCUGUuGCCGg -3' miRNA: 3'- aGUCCUG---UGGCGGCU------------GCGACAcUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 41808 | 0.75 | 0.129015 |
Target: 5'- --cGGACGCCGUguccaCGGCGCUGcUGGCCGa -3' miRNA: 3'- aguCCUGUGGCG-----GCUGCGAC-ACUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 23963 | 0.78 | 0.077488 |
Target: 5'- aUCGGccGACGCCGCCGGCGCcGcGACCGu -3' miRNA: 3'- -AGUC--CUGUGGCGGCUGCGaCaCUGGU- -5' |
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26590 | 5' | -58.1 | NC_005357.1 | + | 32579 | 1.09 | 0.000383 |
Target: 5'- aUCAGGACACCGCCGACGCUGUGACCAa -3' miRNA: 3'- -AGUCCUGUGGCGGCUGCGACACUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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