miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 3' -58.7 NC_005357.1 + 33568 1.08 0.000339
Target:  5'- gAACGCUACCGCACCGUCCUGGGCUACg -3'
miRNA:   3'- -UUGCGAUGGCGUGGCAGGACCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 35841 0.74 0.116144
Target:  5'- uACGUggUGCCG-GCCGUgCUGGGCUACu -3'
miRNA:   3'- uUGCG--AUGGCgUGGCAgGACCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 27690 0.74 0.119489
Target:  5'- cAAUGCUGCgCGUACUG-CCUgGGGCUACc -3'
miRNA:   3'- -UUGCGAUG-GCGUGGCaGGA-CCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 13044 0.73 0.153859
Target:  5'- uGGC-CUACCGCGCCGagUCCgaGGGCUGg -3'
miRNA:   3'- -UUGcGAUGGCGUGGC--AGGa-CCCGAUg -5'
26591 3' -58.7 NC_005357.1 + 16809 0.72 0.15819
Target:  5'- cGCGCUgcuggcgACCGCGCCGccgugguugccacugCCUGGGCcGCa -3'
miRNA:   3'- uUGCGA-------UGGCGUGGCa--------------GGACCCGaUG- -5'
26591 3' -58.7 NC_005357.1 + 14429 0.72 0.15819
Target:  5'- cGCGcCUGCgGCACCGUgUUGGGCg-- -3'
miRNA:   3'- uUGC-GAUGgCGUGGCAgGACCCGaug -5'
26591 3' -58.7 NC_005357.1 + 25613 0.72 0.16263
Target:  5'- cGCGUgaACUGCGCCG-CCUGGGCgcgACc -3'
miRNA:   3'- uUGCGa-UGGCGUGGCaGGACCCGa--UG- -5'
26591 3' -58.7 NC_005357.1 + 35222 0.72 0.171848
Target:  5'- aGAUGCUGCCGUggacaucgcGCUGUCCc-GGCUGCg -3'
miRNA:   3'- -UUGCGAUGGCG---------UGGCAGGacCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 37320 0.72 0.181529
Target:  5'- cGGCGCcaGCCGCACCGgacgCUGGGCcgGCc -3'
miRNA:   3'- -UUGCGa-UGGCGUGGCag--GACCCGa-UG- -5'
26591 3' -58.7 NC_005357.1 + 22589 0.71 0.186549
Target:  5'- cACGCUGCUGaacaaaACCGgCCUGGGCa-- -3'
miRNA:   3'- uUGCGAUGGCg-----UGGCaGGACCCGaug -5'
26591 3' -58.7 NC_005357.1 + 27587 0.7 0.23744
Target:  5'- cGGCGCUggccgccaACgGCAUCGaCCUGGGCgaagGCa -3'
miRNA:   3'- -UUGCGA--------UGgCGUGGCaGGACCCGa---UG- -5'
26591 3' -58.7 NC_005357.1 + 10078 0.7 0.243762
Target:  5'- cGGCgGCgACCGCAgCGaCCUGGGCgGCg -3'
miRNA:   3'- -UUG-CGaUGGCGUgGCaGGACCCGaUG- -5'
26591 3' -58.7 NC_005357.1 + 22836 0.7 0.246329
Target:  5'- cGCGCUGCCGacaGCCGaCagcgcgcgcugcgaaUUGGGCUGCu -3'
miRNA:   3'- uUGCGAUGGCg--UGGCaG---------------GACCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 34257 0.69 0.277486
Target:  5'- gGACGCca--GCGCCuUCCUGGGCcGCa -3'
miRNA:   3'- -UUGCGauggCGUGGcAGGACCCGaUG- -5'
26591 3' -58.7 NC_005357.1 + 427 0.68 0.307067
Target:  5'- -uCGUcgGCCGUACCuuGUCgUUGGGCUGCu -3'
miRNA:   3'- uuGCGa-UGGCGUGG--CAG-GACCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 12826 0.68 0.329984
Target:  5'- cGGCGCUggacaacuggcaaACCGCGCg--CCUGGGCgcgGCc -3'
miRNA:   3'- -UUGCGA-------------UGGCGUGgcaGGACCCGa--UG- -5'
26591 3' -58.7 NC_005357.1 + 8643 0.68 0.330797
Target:  5'- aAACGCcccagGCCGCGCCGUacucgCUGugugcagcGGCUGCu -3'
miRNA:   3'- -UUGCGa----UGGCGUGGCAg----GAC--------CCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 11835 0.67 0.347352
Target:  5'- aGAC-CgGCCGCGCCGcgguuggCCUGGGCg-- -3'
miRNA:   3'- -UUGcGaUGGCGUGGCa------GGACCCGaug -5'
26591 3' -58.7 NC_005357.1 + 28814 0.67 0.364491
Target:  5'- gAGCaGCcAgCGCGCCGUCgUcGGGUUGCg -3'
miRNA:   3'- -UUG-CGaUgGCGUGGCAGgA-CCCGAUG- -5'
26591 3' -58.7 NC_005357.1 + 8549 0.67 0.373278
Target:  5'- -uCGCagGCCGCGCuCGaccucaUCCUGGGCg-- -3'
miRNA:   3'- uuGCGa-UGGCGUG-GC------AGGACCCGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.