miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26591 5' -51.1 NC_005357.1 + 21100 0.67 0.805108
Target:  5'- uGGgcgCGGuGGCCGGCAUCAAGc-CCg -3'
miRNA:   3'- gCCauaGUU-CCGGCUGUGGUUCauGG- -5'
26591 5' -51.1 NC_005357.1 + 21799 0.68 0.795083
Target:  5'- uGGU-UCuuGGCgGACACCGgcAGUugCa -3'
miRNA:   3'- gCCAuAGuuCCGgCUGUGGU--UCAugG- -5'
26591 5' -51.1 NC_005357.1 + 6356 0.68 0.795083
Target:  5'- cCGGcccgAAGGCCGgggcgcuggguuACACCAGGUcgGCCg -3'
miRNA:   3'- -GCCauagUUCCGGC------------UGUGGUUCA--UGG- -5'
26591 5' -51.1 NC_005357.1 + 31043 0.68 0.784875
Target:  5'- uGGcccAUC-AGGUCGcCACCGAgGUGCCg -3'
miRNA:   3'- gCCa--UAGuUCCGGCuGUGGUU-CAUGG- -5'
26591 5' -51.1 NC_005357.1 + 17963 0.68 0.784875
Target:  5'- gCGGUGUCAccccaccgaAGGagacuCGuuACACCAAGUcGCCg -3'
miRNA:   3'- -GCCAUAGU---------UCCg----GC--UGUGGUUCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 17126 0.68 0.778666
Target:  5'- cCGGUggCAGGGCCGGCcgcacgACCucaaggcauucgacgAAGUgACCg -3'
miRNA:   3'- -GCCAuaGUUCCGGCUG------UGG---------------UUCA-UGG- -5'
26591 5' -51.1 NC_005357.1 + 8544 0.68 0.774494
Target:  5'- aGGUAUCGcAGGCCG-CGCUcg--ACCu -3'
miRNA:   3'- gCCAUAGU-UCCGGCuGUGGuucaUGG- -5'
26591 5' -51.1 NC_005357.1 + 928 0.68 0.774494
Target:  5'- uGaGUGUCAggGGGCCGAUcuguCCGuccugcgcGGUGCCc -3'
miRNA:   3'- gC-CAUAGU--UCCGGCUGu---GGU--------UCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 4823 0.68 0.773447
Target:  5'- ---gGUCGGGGCCGGCGCCGucgucgaauucacGGaaagcgGCCa -3'
miRNA:   3'- gccaUAGUUCCGGCUGUGGU-------------UCa-----UGG- -5'
26591 5' -51.1 NC_005357.1 + 16349 0.68 0.763954
Target:  5'- uGG-AUUGAGGCCcGCcCCGAGUucGCCg -3'
miRNA:   3'- gCCaUAGUUCCGGcUGuGGUUCA--UGG- -5'
26591 5' -51.1 NC_005357.1 + 38663 0.68 0.753267
Target:  5'- gGGUcgaacUCAAGGCCcccGGCGagAAGUGCCg -3'
miRNA:   3'- gCCAu----AGUUCCGG---CUGUggUUCAUGG- -5'
26591 5' -51.1 NC_005357.1 + 34500 0.68 0.753267
Target:  5'- uGGcGUgAAGGUgGACGCCGAGcGCa -3'
miRNA:   3'- gCCaUAgUUCCGgCUGUGGUUCaUGg -5'
26591 5' -51.1 NC_005357.1 + 25809 0.69 0.742446
Target:  5'- uCGGUAUCGuugaucugcaccGGGCCGccguugGCGCCGgucAGUuCCa -3'
miRNA:   3'- -GCCAUAGU------------UCCGGC------UGUGGU---UCAuGG- -5'
26591 5' -51.1 NC_005357.1 + 39669 0.69 0.742446
Target:  5'- aGGUGUCGGcaguGGUCGGCAcgcCCGAGcagcGCCg -3'
miRNA:   3'- gCCAUAGUU----CCGGCUGU---GGUUCa---UGG- -5'
26591 5' -51.1 NC_005357.1 + 26164 0.69 0.731504
Target:  5'- gGGUGgccgcgcgCGAGGCCaACGCCAuccgccauaucGUGCCg -3'
miRNA:   3'- gCCAUa-------GUUCCGGcUGUGGUu----------CAUGG- -5'
26591 5' -51.1 NC_005357.1 + 35087 0.69 0.731504
Target:  5'- ---gGUCGAGGCCG-CGCuCAAG-GCCa -3'
miRNA:   3'- gccaUAGUUCCGGCuGUG-GUUCaUGG- -5'
26591 5' -51.1 NC_005357.1 + 39011 0.69 0.730404
Target:  5'- uGaGUAgCGGGGCCGAaaggcccCGCCAAGgcaACCg -3'
miRNA:   3'- gC-CAUaGUUCCGGCU-------GUGGUUCa--UGG- -5'
26591 5' -51.1 NC_005357.1 + 5564 0.69 0.719344
Target:  5'- aCGGUAUCGAcggcgccaacgcuGGCCGcCACCGuGUcgauguccGCCu -3'
miRNA:   3'- -GCCAUAGUU-------------CCGGCuGUGGUuCA--------UGG- -5'
26591 5' -51.1 NC_005357.1 + 40618 0.69 0.70931
Target:  5'- uGGUcggGUCAugcgcaauGGGCCGACACCcacaACCu -3'
miRNA:   3'- gCCA---UAGU--------UCCGGCUGUGGuucaUGG- -5'
26591 5' -51.1 NC_005357.1 + 40915 0.69 0.70931
Target:  5'- uCGGUAuuUCGAGGgcaaCGuCAUCAAGUACg -3'
miRNA:   3'- -GCCAU--AGUUCCg---GCuGUGGUUCAUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.