miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26592 5' -62.1 NC_005357.1 + 30520 0.69 0.170007
Target:  5'- aGGUGGCGCAGCuucucGaccaCGCUGUAuCGCGg -3'
miRNA:   3'- cCCGCCGCGUCGu----Cg---GCGACGU-GUGU- -5'
26592 5' -62.1 NC_005357.1 + 14852 0.69 0.1655
Target:  5'- uGGCGGC-CAGCGccGCaCGCUGgGCGCc -3'
miRNA:   3'- cCCGCCGcGUCGU--CG-GCGACgUGUGu -5'
26592 5' -62.1 NC_005357.1 + 25723 0.7 0.162847
Target:  5'- cGGCGGggucgucguccucacCgGCGGCAGCaCGCUGgGCGCGc -3'
miRNA:   3'- cCCGCC---------------G-CGUCGUCG-GCGACgUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 16052 0.7 0.161099
Target:  5'- aGGCcaguucGCGCAcGUGGCCGCcGCGCGCGg -3'
miRNA:   3'- cCCGc-----CGCGU-CGUCGGCGaCGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 9341 0.7 0.156381
Target:  5'- cGGGCGGCggcauccuuuuGCAguugcuugaugauGCGGCCGCgUGCAUuguGCAg -3'
miRNA:   3'- -CCCGCCG-----------CGU-------------CGUCGGCG-ACGUG---UGU- -5'
26592 5' -62.1 NC_005357.1 + 37082 0.7 0.152614
Target:  5'- aGGCGGCcacGCAGCGcgauGCCauGCUGCGcCACGu -3'
miRNA:   3'- cCCGCCG---CGUCGU----CGG--CGACGU-GUGU- -5'
26592 5' -62.1 NC_005357.1 + 23652 0.7 0.148525
Target:  5'- cGGCGGCG-GGCAGCaaCUGCAC-CAg -3'
miRNA:   3'- cCCGCCGCgUCGUCGgcGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 18291 0.71 0.115998
Target:  5'- uGGGCcaGGCGC-GCAGCCgGCUGgACuACGa -3'
miRNA:   3'- -CCCG--CCGCGuCGUCGG-CGACgUG-UGU- -5'
26592 5' -62.1 NC_005357.1 + 8667 0.71 0.133151
Target:  5'- -cGCuGuGUGCAGCGGCUGCUGCGC-CGc -3'
miRNA:   3'- ccCG-C-CGCGUCGUCGGCGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 9988 0.71 0.136851
Target:  5'- gGGGCGuaGgGGCAGUCGCUGC-CGu- -3'
miRNA:   3'- -CCCGCcgCgUCGUCGGCGACGuGUgu -5'
26592 5' -62.1 NC_005357.1 + 38547 0.7 0.144536
Target:  5'- cGGCGGCGaCGGCAGC-GCgGCcUACAg -3'
miRNA:   3'- cCCGCCGC-GUCGUCGgCGaCGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 41742 0.7 0.152614
Target:  5'- uGGGCGGCcCGGCcggcGCCGCcGUAgGCGg -3'
miRNA:   3'- -CCCGCCGcGUCGu---CGGCGaCGUgUGU- -5'
26592 5' -62.1 NC_005357.1 + 31286 0.72 0.106718
Target:  5'- aGGCGGCccaGCAGCAgGCCGaaCUGCuCGCAc -3'
miRNA:   3'- cCCGCCG---CGUCGU-CGGC--GACGuGUGU- -5'
26592 5' -62.1 NC_005357.1 + 7894 0.72 0.100081
Target:  5'- aGGGCGGCGCgugcguagaucgccAGCuGCuCGUUGCGCuCGg -3'
miRNA:   3'- -CCCGCCGCG--------------UCGuCG-GCGACGUGuGU- -5'
26592 5' -62.1 NC_005357.1 + 14724 0.74 0.080591
Target:  5'- cGGCGGCG-AGCcGCUGCcgGCGCGCGg -3'
miRNA:   3'- cCCGCCGCgUCGuCGGCGa-CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 14615 0.74 0.075509
Target:  5'- cGGGCaGCGCGcgcgaggacgugcuGCGGCUGCgcgGCGCGCGc -3'
miRNA:   3'- -CCCGcCGCGU--------------CGUCGGCGa--CGUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 15606 0.74 0.074025
Target:  5'- gGGGCGGCGCAGCcuGCCaaaaaCaGCACGCc -3'
miRNA:   3'- -CCCGCCGCGUCGu-CGGc----GaCGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 5632 0.76 0.05727
Target:  5'- uGGcGCGGCGCAGCuugcuGGUgGCUGgACGCGg -3'
miRNA:   3'- -CC-CGCCGCGUCG-----UCGgCGACgUGUGU- -5'
26592 5' -62.1 NC_005357.1 + 18680 0.78 0.035087
Target:  5'- cGGUGGCGcCGGCAuggcGCUGCUGCGCGCc -3'
miRNA:   3'- cCCGCCGC-GUCGU----CGGCGACGUGUGu -5'
26592 5' -62.1 NC_005357.1 + 35206 0.66 0.292634
Target:  5'- aGGGUGaGCGCGGCGcagauGCUGCcGUGgACAu -3'
miRNA:   3'- -CCCGC-CGCGUCGU-----CGGCGaCGUgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.