miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26593 3' -63 NC_005357.1 + 33912 0.94 0.001822
Target:  5'- aUCGCCUACGCCACGGCCCACC-GCAUc -3'
miRNA:   3'- -AGCGGAUGCGGUGCCGGGUGGgCGUA- -5'
26593 3' -63 NC_005357.1 + 30087 0.76 0.043189
Target:  5'- gCGCCcggGCGCCACGGCCCuuguCCCagGCGa -3'
miRNA:   3'- aGCGGa--UGCGGUGCCGGGu---GGG--CGUa -5'
26593 3' -63 NC_005357.1 + 41811 0.75 0.060778
Target:  5'- aCGCCguguccacgGCGCUGCuGGCCgACCCGCAg -3'
miRNA:   3'- aGCGGa--------UGCGGUG-CCGGgUGGGCGUa -5'
26593 3' -63 NC_005357.1 + 24756 0.75 0.060778
Target:  5'- uUCGCCUACGCC-CaGCCCGCCgaCGCc- -3'
miRNA:   3'- -AGCGGAUGCGGuGcCGGGUGG--GCGua -5'
26593 3' -63 NC_005357.1 + 37917 0.73 0.080566
Target:  5'- aCGCC-ACGUCACgGGCgCCGCCCGUg- -3'
miRNA:   3'- aGCGGaUGCGGUG-CCG-GGUGGGCGua -5'
26593 3' -63 NC_005357.1 + 30127 0.73 0.085205
Target:  5'- gCGCCagaacACGCCGcCGGCCUGCaCCGCGUc -3'
miRNA:   3'- aGCGGa----UGCGGU-GCCGGGUG-GGCGUA- -5'
26593 3' -63 NC_005357.1 + 2351 0.72 0.089847
Target:  5'- gCGCgUGCGCCGCaauucGGCCUgcacguggcagacGCCCGCGUg -3'
miRNA:   3'- aGCGgAUGCGGUG-----CCGGG-------------UGGGCGUA- -5'
26593 3' -63 NC_005357.1 + 16370 0.71 0.106423
Target:  5'- uUCGCCgaGCGCauggaGCGcGCCCGCCgCGCGg -3'
miRNA:   3'- -AGCGGa-UGCGg----UGC-CGGGUGG-GCGUa -5'
26593 3' -63 NC_005357.1 + 31588 0.71 0.106423
Target:  5'- cUCGCCUGgGCCugcuucUGGCCCuACCUGCu- -3'
miRNA:   3'- -AGCGGAUgCGGu-----GCCGGG-UGGGCGua -5'
26593 3' -63 NC_005357.1 + 7065 0.71 0.11816
Target:  5'- -gGCCagguacuucaugACGCCGCGGCCUACCCacgGCGc -3'
miRNA:   3'- agCGGa-----------UGCGGUGCCGGGUGGG---CGUa -5'
26593 3' -63 NC_005357.1 + 37293 0.7 0.126875
Target:  5'- cCGCCUGCGCgGCacguugcaguucaacGGCgCCAgCCGCAc -3'
miRNA:   3'- aGCGGAUGCGgUG---------------CCG-GGUgGGCGUa -5'
26593 3' -63 NC_005357.1 + 18904 0.7 0.143762
Target:  5'- cCGCgUGCGCCGCcuggaaGGCgCGCUCGCGg -3'
miRNA:   3'- aGCGgAUGCGGUG------CCGgGUGGGCGUa -5'
26593 3' -63 NC_005357.1 + 29115 0.7 0.147696
Target:  5'- -aGCCUACGCCGCcuacaacgccGGCCCcggcGCgCUGCAa -3'
miRNA:   3'- agCGGAUGCGGUG----------CCGGG----UG-GGCGUa -5'
26593 3' -63 NC_005357.1 + 28046 0.69 0.160091
Target:  5'- aCGCCUACGuuCCGCGGCgCGgaugccCCCGCc- -3'
miRNA:   3'- aGCGGAUGC--GGUGCCGgGU------GGGCGua -5'
26593 3' -63 NC_005357.1 + 28700 0.69 0.170676
Target:  5'- cCGaCCUAUGCCuCGGCCUACCUcaacaaguauuccggGCAg -3'
miRNA:   3'- aGC-GGAUGCGGuGCCGGGUGGG---------------CGUa -5'
26593 3' -63 NC_005357.1 + 14339 0.69 0.172499
Target:  5'- cCGCgacggaauacgACGCCGCGGCCaccuGCCCGCu- -3'
miRNA:   3'- aGCGga---------UGCGGUGCCGGg---UGGGCGua -5'
26593 3' -63 NC_005357.1 + 23878 0.68 0.178075
Target:  5'- cUCGCCccggaaUACGCCAaggaagUGcGCCaCGCCCGCGg -3'
miRNA:   3'- -AGCGG------AUGCGGU------GC-CGG-GUGGGCGUa -5'
26593 3' -63 NC_005357.1 + 24030 0.68 0.182843
Target:  5'- uUCGCCgacguggcCGCCAcCGGCgCCAUCgGCAa -3'
miRNA:   3'- -AGCGGau------GCGGU-GCCG-GGUGGgCGUa -5'
26593 3' -63 NC_005357.1 + 35809 0.68 0.187724
Target:  5'- gCGCgCaGCGCCACGcGCCCGCUgGuCAUc -3'
miRNA:   3'- aGCG-GaUGCGGUGC-CGGGUGGgC-GUA- -5'
26593 3' -63 NC_005357.1 + 11515 0.68 0.197831
Target:  5'- gCGCCUGCGCUggcgugaGGCCCugCgaGCGg -3'
miRNA:   3'- aGCGGAUGCGGug-----CCGGGugGg-CGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.