miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26593 5' -58.2 NC_005357.1 + 2829 0.66 0.441231
Target:  5'- gUGCUCGCGgccaCGcGCaGCGGCGccaGCAc -3'
miRNA:   3'- aAUGAGCGCa---GC-CGaCGCCGUag-CGU- -5'
26593 5' -58.2 NC_005357.1 + 41106 0.66 0.421755
Target:  5'- --cCUCGCGcuugUCGGCcugGUGGcCGUCGCc -3'
miRNA:   3'- aauGAGCGC----AGCCGa--CGCC-GUAGCGu -5'
26593 5' -58.2 NC_005357.1 + 9205 0.66 0.421755
Target:  5'- cUGCUCgGCGgcgCGGCgcacguucUGCGGCG-CGCc -3'
miRNA:   3'- aAUGAG-CGCa--GCCG--------ACGCCGUaGCGu -5'
26593 5' -58.2 NC_005357.1 + 14955 0.67 0.393537
Target:  5'- --cCUCGCGUgGuGCgugGCGGCG-CGCu -3'
miRNA:   3'- aauGAGCGCAgC-CGa--CGCCGUaGCGu -5'
26593 5' -58.2 NC_005357.1 + 25044 0.67 0.393537
Target:  5'- -aGCggUGCGUCGGCgcgaUGCaGGCAuaccugUCGCAg -3'
miRNA:   3'- aaUGa-GCGCAGCCG----ACG-CCGU------AGCGU- -5'
26593 5' -58.2 NC_005357.1 + 1147 0.67 0.384407
Target:  5'- -aGCUCGCGcuaCGGCgGCGGUcaCGCc -3'
miRNA:   3'- aaUGAGCGCa--GCCGaCGCCGuaGCGu -5'
26593 5' -58.2 NC_005357.1 + 13386 0.67 0.366572
Target:  5'- aUGCccagCGCG-CGGUuguagGCGGCAUCGUu -3'
miRNA:   3'- aAUGa---GCGCaGCCGa----CGCCGUAGCGu -5'
26593 5' -58.2 NC_005357.1 + 10351 0.68 0.340907
Target:  5'- -gGC-CGUGUUGGCgggGCcgaugagcauGGCGUCGCAu -3'
miRNA:   3'- aaUGaGCGCAGCCGa--CG----------CCGUAGCGU- -5'
26593 5' -58.2 NC_005357.1 + 27701 0.68 0.316567
Target:  5'- -gGCcgCGCGcCGGCaGCGGC-UCGCc -3'
miRNA:   3'- aaUGa-GCGCaGCCGaCGCCGuAGCGu -5'
26593 5' -58.2 NC_005357.1 + 28067 0.69 0.286187
Target:  5'- cUGCUCgaacaGCGggcaggUGGCcGCGGCGUCGUAu -3'
miRNA:   3'- aAUGAG-----CGCa-----GCCGaCGCCGUAGCGU- -5'
26593 5' -58.2 NC_005357.1 + 19589 0.74 0.130538
Target:  5'- -aGCgcgCGCuGUCGGCUGuCGGCAgCGCGg -3'
miRNA:   3'- aaUGa--GCG-CAGCCGAC-GCCGUaGCGU- -5'
26593 5' -58.2 NC_005357.1 + 33950 1.06 0.000481
Target:  5'- aUUACUCGCGUCGGCUGCGGCAUCGCAg -3'
miRNA:   3'- -AAUGAGCGCAGCCGACGCCGUAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.