miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26594 3' -60.5 NC_005357.1 + 38855 0.66 0.386883
Target:  5'- gCCGCGgaucgguguACGCCCa-GCccGCUGCUgCGCu -3'
miRNA:   3'- -GGCGC---------UGCGGGggCGcuUGACGA-GCG- -5'
26594 3' -60.5 NC_005357.1 + 23106 0.67 0.37825
Target:  5'- aCgGCGGCGCCCaCgGCGAcaGCgguaacgGCUCc- -3'
miRNA:   3'- -GgCGCUGCGGG-GgCGCU--UGa------CGAGcg -5'
26594 3' -60.5 NC_005357.1 + 4931 0.67 0.37825
Target:  5'- -aGCGAUGCCCgCGaCGGuCUGCaCGUc -3'
miRNA:   3'- ggCGCUGCGGGgGC-GCUuGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 18115 0.67 0.37825
Target:  5'- uUCGCGcCGUCCgguaCGuCGAACUugucgcccgGCUCGCg -3'
miRNA:   3'- -GGCGCuGCGGGg---GC-GCUUGA---------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 26244 0.67 0.377394
Target:  5'- gCGCGuCGCCgaaggcacgggcaCCCGCcGGCcuggucgGCUCGCg -3'
miRNA:   3'- gGCGCuGCGG-------------GGGCGcUUGa------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 12748 0.67 0.375685
Target:  5'- gCCGCGcccagacgcuuggcGCGCUCCUGgGAAaaaUGCUUGa -3'
miRNA:   3'- -GGCGC--------------UGCGGGGGCgCUUg--ACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 9814 0.67 0.369747
Target:  5'- aCCGCGGCgucgcgGCCCUugaCGCGGGCcaGCUUGg -3'
miRNA:   3'- -GGCGCUG------CGGGG---GCGCUUGa-CGAGCg -5'
26594 3' -60.5 NC_005357.1 + 16123 0.67 0.369747
Target:  5'- aCGUcgGugGCCCCgaCGUaGGACUGCggcCGCa -3'
miRNA:   3'- gGCG--CugCGGGG--GCG-CUUGACGa--GCG- -5'
26594 3' -60.5 NC_005357.1 + 16676 0.67 0.369747
Target:  5'- gCCGCccagcaGCGCgCCCaGCGuGCUGC-CGCc -3'
miRNA:   3'- -GGCGc-----UGCGgGGG-CGCuUGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 4740 0.67 0.368904
Target:  5'- aCCGCGAUGUUCucggccacggCCGCGAugUucucggcGUUCGCc -3'
miRNA:   3'- -GGCGCUGCGGG----------GGCGCUugA-------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 14036 0.67 0.361376
Target:  5'- gCCGCGcCGCCggCGuCGAACUGgaacacCUCGCc -3'
miRNA:   3'- -GGCGCuGCGGggGC-GCUUGAC------GAGCG- -5'
26594 3' -60.5 NC_005357.1 + 14338 0.67 0.345033
Target:  5'- aCCGCGACGgaauacgaCgCCGCGGccaccugcccGCUGUUCGa -3'
miRNA:   3'- -GGCGCUGCg-------GgGGCGCU----------UGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 11406 0.67 0.337063
Target:  5'- gCGCGAuUGCCucggccggcaagCCCGUGGACaGgUCGCg -3'
miRNA:   3'- gGCGCU-GCGG------------GGGCGCUUGaCgAGCG- -5'
26594 3' -60.5 NC_005357.1 + 26327 0.68 0.321527
Target:  5'- gUCuuGACGCgCaCCGCGAACUGgC-CGCg -3'
miRNA:   3'- -GGcgCUGCGgG-GGCGCUUGAC-GaGCG- -5'
26594 3' -60.5 NC_005357.1 + 40511 0.68 0.321527
Target:  5'- uCCGCGAcuggaaCGCaggaaaaaUCCCGCu-GCUGUUCGCc -3'
miRNA:   3'- -GGCGCU------GCG--------GGGGCGcuUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 3182 0.68 0.306534
Target:  5'- gCC-CGGCGUCCgCUGCGuACaGCUUGCu -3'
miRNA:   3'- -GGcGCUGCGGG-GGCGCuUGaCGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 27838 0.68 0.29924
Target:  5'- nCgGUGGCGCCggCCGCGccGCUGCUCa- -3'
miRNA:   3'- -GgCGCUGCGGg-GGCGCu-UGACGAGcg -5'
26594 3' -60.5 NC_005357.1 + 24771 0.68 0.29924
Target:  5'- cCCGcCGACGCCaucaagaUCGUGGccguACUGC-CGCa -3'
miRNA:   3'- -GGC-GCUGCGGg------GGCGCU----UGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 32689 0.68 0.292081
Target:  5'- -aGCG-CGCCCaCCaCGAGCaGUUCGCc -3'
miRNA:   3'- ggCGCuGCGGG-GGcGCUUGaCGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 9725 0.69 0.285057
Target:  5'- gCCuCGAaGCCgCgGgCGAACUGCUCGUg -3'
miRNA:   3'- -GGcGCUgCGGgGgC-GCUUGACGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.