miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26594 5' -51.2 NC_005357.1 + 1158 0.66 0.892249
Target:  5'- cGGCGGCGGUcacgccccacauagUCUCGccgccGGggUCG-GCc -3'
miRNA:   3'- cCCGCCGCUA--------------AGAGCu----UCuaAGCuCG- -5'
26594 5' -51.2 NC_005357.1 + 30861 0.66 0.879206
Target:  5'- uGGGCGGC-AUggcUUCGAuGAccggCGGGCa -3'
miRNA:   3'- -CCCGCCGcUAa--GAGCUuCUaa--GCUCG- -5'
26594 5' -51.2 NC_005357.1 + 26190 0.66 0.879206
Target:  5'- cGGUGGCGAUggcUUCGGuguAGG-UCGAGg -3'
miRNA:   3'- cCCGCCGCUAa--GAGCU---UCUaAGCUCg -5'
26594 5' -51.2 NC_005357.1 + 22441 0.66 0.879206
Target:  5'- cGGCGGCGGa-CUCGuccaGUUCGGGa -3'
miRNA:   3'- cCCGCCGCUaaGAGCuuc-UAAGCUCg -5'
26594 5' -51.2 NC_005357.1 + 5472 0.66 0.876021
Target:  5'- cGGGCGGCGAgguguugccgaUgGggGGUaCG-GCg -3'
miRNA:   3'- -CCCGCCGCUaag--------AgCuuCUAaGCuCG- -5'
26594 5' -51.2 NC_005357.1 + 24562 0.66 0.854289
Target:  5'- -cGCGGCGAUgg-CGAGGccggccacggUCGGGCc -3'
miRNA:   3'- ccCGCCGCUAagaGCUUCua--------AGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 4105 0.66 0.854289
Target:  5'- uGGGCGGCGcugaAUUCgUCGcGGucgUCG-GCu -3'
miRNA:   3'- -CCCGCCGC----UAAG-AGCuUCua-AGCuCG- -5'
26594 5' -51.2 NC_005357.1 + 34367 0.66 0.854289
Target:  5'- uGGGCGGUGAac--UGAuGGU-CGAGCa -3'
miRNA:   3'- -CCCGCCGCUaagaGCUuCUAaGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 30683 0.66 0.854289
Target:  5'- aGGCGGCGGgaaUUGucGGUguuguggCGGGCa -3'
miRNA:   3'- cCCGCCGCUaagAGCuuCUAa------GCUCG- -5'
26594 5' -51.2 NC_005357.1 + 24302 0.67 0.836418
Target:  5'- gGGGCGGUGAgg-UCGgcGAgcagccgCGGGUc -3'
miRNA:   3'- -CCCGCCGCUaagAGCuuCUaa-----GCUCG- -5'
26594 5' -51.2 NC_005357.1 + 35187 0.67 0.827133
Target:  5'- uGGGCGGcCGAca-UCGccGAgggUGAGCg -3'
miRNA:   3'- -CCCGCC-GCUaagAGCuuCUaa-GCUCG- -5'
26594 5' -51.2 NC_005357.1 + 16822 0.67 0.827133
Target:  5'- aGGCGGCGcaGUUCacgCGGcgcauaguucGGAUgcaCGAGCg -3'
miRNA:   3'- cCCGCCGC--UAAGa--GCU----------UCUAa--GCUCG- -5'
26594 5' -51.2 NC_005357.1 + 17092 0.68 0.798002
Target:  5'- cGGC-GCGGUUCUCGGccGGGccUUgGGGCu -3'
miRNA:   3'- cCCGcCGCUAAGAGCU--UCU--AAgCUCG- -5'
26594 5' -51.2 NC_005357.1 + 21593 0.68 0.798002
Target:  5'- cGGUGGCGGUcaUCUgCGGAuuGGUgccguuggCGAGCa -3'
miRNA:   3'- cCCGCCGCUA--AGA-GCUU--CUAa-------GCUCG- -5'
26594 5' -51.2 NC_005357.1 + 25242 0.69 0.735061
Target:  5'- cGGCGGCGAaaucagCcCGGAaauGUUCGGGCg -3'
miRNA:   3'- cCCGCCGCUaa----GaGCUUc--UAAGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 10817 0.7 0.680576
Target:  5'- cGGcGCGGCuGAauccuuccggcucggUCUUGAGGuggUCGAGCa -3'
miRNA:   3'- -CC-CGCCG-CUa--------------AGAGCUUCua-AGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 3753 0.7 0.679446
Target:  5'- aGGGCGGCacUUCUCGccGGGGgccUUGAGUu -3'
miRNA:   3'- -CCCGCCGcuAAGAGC--UUCUa--AGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 36628 0.7 0.679446
Target:  5'- aGGGCGGC--UUCUaccccAAGGUcaUCGAGCa -3'
miRNA:   3'- -CCCGCCGcuAAGAgc---UUCUA--AGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 29952 0.71 0.634008
Target:  5'- -cGCGGCuGGUUCUCGAAcucguccguuccGAUcUUGAGCa -3'
miRNA:   3'- ccCGCCG-CUAAGAGCUU------------CUA-AGCUCG- -5'
26594 5' -51.2 NC_005357.1 + 10098 0.72 0.554803
Target:  5'- uGGGCGGCGGUUgUCG-GGAcgCcGGCc -3'
miRNA:   3'- -CCCGCCGCUAAgAGCuUCUaaGcUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.