miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26596 5' -62.1 NC_005357.1 + 3609 0.67 0.291973
Target:  5'- gGCCGUguauucGGAUgCGccauuCACGCCGCCGAa -3'
miRNA:   3'- gCGGCG------CCUA-GCuc---GUGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 28476 0.67 0.291267
Target:  5'- uCGCCGUaGuGGUCGAGCAucCGCUcggcauuGCCGAa -3'
miRNA:   3'- -GCGGCG-C-CUAGCUCGU--GCGG-------CGGCUc -5'
26596 5' -62.1 NC_005357.1 + 23768 0.67 0.284974
Target:  5'- gGCCGgGGG-CGGGCGacCGCCcCCGAu -3'
miRNA:   3'- gCGGCgCCUaGCUCGU--GCGGcGGCUc -5'
26596 5' -62.1 NC_005357.1 + 13447 0.67 0.278109
Target:  5'- cCGCCagcuugGCGGccUCGGGCGCGgUGUCGGGc -3'
miRNA:   3'- -GCGG------CGCCu-AGCUCGUGCgGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 14387 0.67 0.27743
Target:  5'- gCGCCGCGGAaCGuaGGCguagcgaagcuggGCGUCGCCa-- -3'
miRNA:   3'- -GCGGCGCCUaGC--UCG-------------UGCGGCGGcuc -5'
26596 5' -62.1 NC_005357.1 + 31671 0.67 0.271376
Target:  5'- -aCUGCGGGccgaagUCGAGCGCGCCcuuGgCGAGc -3'
miRNA:   3'- gcGGCGCCU------AGCUCGUGCGG---CgGCUC- -5'
26596 5' -62.1 NC_005357.1 + 34720 0.67 0.264775
Target:  5'- gCGCUGCaGuucAUCG-GCAagccgGCCGCCGAGg -3'
miRNA:   3'- -GCGGCGcC---UAGCuCGUg----CGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 16371 0.68 0.258304
Target:  5'- uCGCCgaGCGcAUgGAGCGCGCcCGCCGc- -3'
miRNA:   3'- -GCGG--CGCcUAgCUCGUGCG-GCGGCuc -5'
26596 5' -62.1 NC_005357.1 + 5559 0.68 0.258304
Target:  5'- cCGCCaCGGuAUCGAcggcgccaacGCugGCCGCCa-- -3'
miRNA:   3'- -GCGGcGCC-UAGCU----------CGugCGGCGGcuc -5'
26596 5' -62.1 NC_005357.1 + 19601 0.68 0.251963
Target:  5'- -uCUGCGGGUCGAuCuuGCCGuCCGGGg -3'
miRNA:   3'- gcGGCGCCUAGCUcGugCGGC-GGCUC- -5'
26596 5' -62.1 NC_005357.1 + 22903 0.68 0.251963
Target:  5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3'
miRNA:   3'- gCGGCGCcUAGCUCGU--GCGGCGGCuc -5'
26596 5' -62.1 NC_005357.1 + 5809 0.68 0.251963
Target:  5'- gCGCCaGCGGAuagUCGGGCAUGgCgUGCCGcAGc -3'
miRNA:   3'- -GCGG-CGCCU---AGCUCGUGC-G-GCGGC-UC- -5'
26596 5' -62.1 NC_005357.1 + 28558 0.68 0.245751
Target:  5'- gGCCGcCGGccAUCGcGGCGCGCaCGUCGGc -3'
miRNA:   3'- gCGGC-GCC--UAGC-UCGUGCG-GCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 41627 0.68 0.245751
Target:  5'- gGCUG-GGcgCG-GCGCGUCGCCGGa -3'
miRNA:   3'- gCGGCgCCuaGCuCGUGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 35051 0.68 0.233709
Target:  5'- uCGCCGCGGu----GCcCGCCGCUGGa -3'
miRNA:   3'- -GCGGCGCCuagcuCGuGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 18577 0.68 0.227876
Target:  5'- gCGCuCGCGGugaCGGcCugGCCGuCCGAGa -3'
miRNA:   3'- -GCG-GCGCCua-GCUcGugCGGC-GGCUC- -5'
26596 5' -62.1 NC_005357.1 + 8435 0.69 0.222166
Target:  5'- gCGUCGCGGAacaUCG-GCGCGaugucggCGUCGAGg -3'
miRNA:   3'- -GCGGCGCCU---AGCuCGUGCg------GCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 22072 0.69 0.211113
Target:  5'- gGUCGCGG-UCG-GCGCGCgGCuCGAu -3'
miRNA:   3'- gCGGCGCCuAGCuCGUGCGgCG-GCUc -5'
26596 5' -62.1 NC_005357.1 + 24323 0.69 0.202614
Target:  5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3'
miRNA:   3'- gCGGCGCCUAG--------CUCG-UGCGG---------------CGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 34795 0.69 0.200536
Target:  5'- cCGgCGUGGGUCGAGcCGCGCCcCCuGAc -3'
miRNA:   3'- -GCgGCGCCUAGCUC-GUGCGGcGG-CUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.