Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26597 | 3' | -59.5 | NC_005357.1 | + | 34885 | 0.7 | 0.256993 |
Target: 5'- -gCGCCGC-GGAuCGAgcACGcCGCCGAGc -3' miRNA: 3'- ggGCGGCGaCCU-GCU--UGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 32344 | 0.7 | 0.263486 |
Target: 5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3' miRNA: 3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 40950 | 0.7 | 0.283762 |
Target: 5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3' miRNA: 3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14060 | 0.7 | 0.283762 |
Target: 5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3' miRNA: 3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13688 | 0.7 | 0.268775 |
Target: 5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3' miRNA: 3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 38877 | 0.7 | 0.27687 |
Target: 5'- gCCCGCUGCUGcGCuauucGGCGGCGCCuGGa -3' miRNA: 3'- -GGGCGGCGACcUGc----UUGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14080 | 0.7 | 0.272798 |
Target: 5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3' miRNA: 3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14386 | 0.7 | 0.270111 |
Target: 5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3' miRNA: 3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 25492 | 0.7 | 0.26612 |
Target: 5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3' miRNA: 3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 16808 | 0.7 | 0.256993 |
Target: 5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3' miRNA: 3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14247 | 0.69 | 0.305254 |
Target: 5'- gCCGCaccuGCUGGGCGugggcaacGGCGugGUCGAu -3' miRNA: 3'- gGGCGg---CGACCUGC--------UUGCugCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 31889 | 0.69 | 0.29079 |
Target: 5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3' miRNA: 3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 25761 | 0.69 | 0.297954 |
Target: 5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3' miRNA: 3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 2745 | 0.69 | 0.320262 |
Target: 5'- gCCCGgCGCUGcuCGGGCG-UGCCGAc -3' miRNA: 3'- -GGGCgGCGACcuGCUUGCuGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 40121 | 0.69 | 0.312689 |
Target: 5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3' miRNA: 3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11841 | 0.69 | 0.327971 |
Target: 5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3' miRNA: 3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 15916 | 0.68 | 0.363506 |
Target: 5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3' miRNA: 3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 30369 | 0.68 | 0.376215 |
Target: 5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3' miRNA: 3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 31789 | 0.68 | 0.335817 |
Target: 5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3' miRNA: 3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 23151 | 0.68 | 0.335817 |
Target: 5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3' miRNA: 3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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