Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26597 | 3' | -59.5 | NC_005357.1 | + | 14207 | 0.68 | 0.343798 |
Target: 5'- aCCCG-CGCgUGGuCGucgGCGugGCCGAc -3' miRNA: 3'- -GGGCgGCG-ACCuGCu--UGCugCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 17442 | 0.68 | 0.343798 |
Target: 5'- gCCC-CCuuuguGCUGGugGGugGGCGCguCGAGu -3' miRNA: 3'- -GGGcGG-----CGACCugCUugCUGCG--GCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11193 | 0.68 | 0.343798 |
Target: 5'- gCUCGuaGCUGGGCc-GCG-CGCCGGGg -3' miRNA: 3'- -GGGCggCGACCUGcuUGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 31789 | 0.68 | 0.335817 |
Target: 5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3' miRNA: 3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 23151 | 0.68 | 0.335817 |
Target: 5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3' miRNA: 3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 10381 | 0.67 | 0.385724 |
Target: 5'- gUCGCauaGUUGuGCGAGCG-CGCCGGGu -3' miRNA: 3'- gGGCGg--CGACcUGCUUGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 17263 | 0.67 | 0.43089 |
Target: 5'- aCCCGCCGacc-ACGAGCGAgGgCCGGu -3' miRNA: 3'- -GGGCGGCgaccUGCUUGCUgC-GGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 19321 | 0.67 | 0.43089 |
Target: 5'- aCCGCUGUcgccgUGGGCGccgccguUGGCGUCGGGg -3' miRNA: 3'- gGGCGGCG-----ACCUGCuu-----GCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 26219 | 0.67 | 0.421609 |
Target: 5'- gCUGCUGCUcacgucuucGGGCGAAUGGCGCgUGGc -3' miRNA: 3'- gGGCGGCGA---------CCUGCUUGCUGCG-GCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 17723 | 0.67 | 0.41245 |
Target: 5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3' miRNA: 3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13557 | 0.67 | 0.403414 |
Target: 5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3' miRNA: 3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13390 | 0.67 | 0.394505 |
Target: 5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3' miRNA: 3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11233 | 0.67 | 0.428093 |
Target: 5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3' miRNA: 3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 28281 | 0.67 | 0.41245 |
Target: 5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3' miRNA: 3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 4035 | 0.67 | 0.41245 |
Target: 5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3' miRNA: 3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 20989 | 0.67 | 0.403414 |
Target: 5'- cCCCGCCGCaGGAaaugcaGGGCGuugaccugaACGUgGAGu -3' miRNA: 3'- -GGGCGGCGaCCUg-----CUUGC---------UGCGgCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 35027 | 0.67 | 0.41245 |
Target: 5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3' miRNA: 3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 8994 | 0.67 | 0.41245 |
Target: 5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3' miRNA: 3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 18432 | 0.67 | 0.403414 |
Target: 5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3' miRNA: 3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 33202 | 0.67 | 0.389221 |
Target: 5'- aCUGCCGCcGGGCGcgccgcagaacgugcGccGCGcCGCCGAGc -3' miRNA: 3'- gGGCGGCGaCCUGC---------------U--UGCuGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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