miRNA display CGI


Results 61 - 74 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 3' -59.5 NC_005357.1 + 34496 0.66 0.44029
Target:  5'- gCCGUgGCgugaaGGugGACGCCGAGc -3'
miRNA:   3'- gGGCGgCGaccugCUugCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 34635 0.73 0.174176
Target:  5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3'
miRNA:   3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 34885 0.7 0.256993
Target:  5'- -gCGCCGC-GGAuCGAgcACGcCGCCGAGc -3'
miRNA:   3'- ggGCGGCGaCCU-GCU--UGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 35027 0.67 0.41245
Target:  5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3'
miRNA:   3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5'
26597 3' -59.5 NC_005357.1 + 35061 1.1 0.000282
Target:  5'- gCCCGCCGCUGGACGAACGACGCCGAGg -3'
miRNA:   3'- -GGGCGGCGACCUGCUUGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 36264 0.66 0.469169
Target:  5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3'
miRNA:   3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5'
26597 3' -59.5 NC_005357.1 + 36691 0.72 0.204329
Target:  5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3'
miRNA:   3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5'
26597 3' -59.5 NC_005357.1 + 37553 0.66 0.469169
Target:  5'- gCCGCCgucgccgcGCUGGGC-AACGACcugaCCGGGc -3'
miRNA:   3'- gGGCGG--------CGACCUGcUUGCUGc---GGCUC- -5'
26597 3' -59.5 NC_005357.1 + 37633 0.74 0.132192
Target:  5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3'
miRNA:   3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 38877 0.7 0.27687
Target:  5'- gCCCGCUGCUGcGCuauucGGCGGCGCCuGGa -3'
miRNA:   3'- -GGGCGGCGACcUGc----UUGCUGCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 40121 0.69 0.312689
Target:  5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3'
miRNA:   3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5'
26597 3' -59.5 NC_005357.1 + 40360 0.71 0.244402
Target:  5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3'
miRNA:   3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 40950 0.7 0.283762
Target:  5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3'
miRNA:   3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 41339 0.66 0.48895
Target:  5'- aCCGCCGCcaacAUGAaguACGcGCGCCGGGu -3'
miRNA:   3'- gGGCGGCGacc-UGCU---UGC-UGCGGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.