miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 3' -59.5 NC_005357.1 + 18432 0.67 0.403414
Target:  5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3'
miRNA:   3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 17723 0.67 0.41245
Target:  5'- gCCCGaCCGaCUGGcacCGAugGACaGCCuGGGc -3'
miRNA:   3'- -GGGC-GGC-GACCu--GCUugCUG-CGG-CUC- -5'
26597 3' -59.5 NC_005357.1 + 17442 0.68 0.343798
Target:  5'- gCCC-CCuuuguGCUGGugGGugGGCGCguCGAGu -3'
miRNA:   3'- -GGGcGG-----CGACCugCUugCUGCG--GCUC- -5'
26597 3' -59.5 NC_005357.1 + 17308 0.72 0.182636
Target:  5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3'
miRNA:   3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 17263 0.67 0.43089
Target:  5'- aCCCGCCGacc-ACGAGCGAgGgCCGGu -3'
miRNA:   3'- -GGGCGGCgaccUGCUUGCUgC-GGCUc -5'
26597 3' -59.5 NC_005357.1 + 16808 0.7 0.256993
Target:  5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3'
miRNA:   3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5'
26597 3' -59.5 NC_005357.1 + 16759 0.72 0.188971
Target:  5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3'
miRNA:   3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 16723 0.71 0.215161
Target:  5'- cCCCGCCGCgGGGCuGGuaugagcaGCGuuGCCGAa -3'
miRNA:   3'- -GGGCGGCGaCCUG-CU--------UGCugCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 16391 0.73 0.165626
Target:  5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 15916 0.68 0.363506
Target:  5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3'
miRNA:   3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 14536 0.72 0.193974
Target:  5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3'
miRNA:   3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 14386 0.7 0.270111
Target:  5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3'
miRNA:   3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 14247 0.69 0.305254
Target:  5'- gCCGCaccuGCUGGGCGugggcaacGGCGugGUCGAu -3'
miRNA:   3'- gGGCGg---CGACCUGC--------UUGCugCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 14207 0.68 0.343798
Target:  5'- aCCCG-CGCgUGGuCGucgGCGugGCCGAc -3'
miRNA:   3'- -GGGCgGCG-ACCuGCu--UGCugCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 14080 0.7 0.272798
Target:  5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3'
miRNA:   3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 14060 0.7 0.283762
Target:  5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3'
miRNA:   3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 13688 0.7 0.268775
Target:  5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3'
miRNA:   3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 13557 0.67 0.403414
Target:  5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3'
miRNA:   3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 13500 0.66 0.44029
Target:  5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3'
miRNA:   3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 13390 0.67 0.394505
Target:  5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3'
miRNA:   3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.