Results 61 - 74 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26597 | 3' | -59.5 | NC_005357.1 | + | 33107 | 0.74 | 0.133633 |
Target: 5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3' miRNA: 3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 29789 | 0.74 | 0.133633 |
Target: 5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3' miRNA: 3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 3335 | 0.72 | 0.204329 |
Target: 5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3' miRNA: 3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 27591 | 0.72 | 0.208066 |
Target: 5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3' miRNA: 3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 31889 | 0.69 | 0.29079 |
Target: 5'- aCCCGuuGCgcgugGcGGCGGaaaGCGugGCCGGc -3' miRNA: 3'- -GGGCggCGa----C-CUGCU---UGCugCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 38877 | 0.7 | 0.27687 |
Target: 5'- gCCCGCUGCUGcGCuauucGGCGGCGCCuGGa -3' miRNA: 3'- -GGGCGGCGACcUGc----UUGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14080 | 0.7 | 0.272798 |
Target: 5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3' miRNA: 3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14386 | 0.7 | 0.270111 |
Target: 5'- aCCGUCGCc-GACGuguucuucGGCGACGCCGAc -3' miRNA: 3'- gGGCGGCGacCUGC--------UUGCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13688 | 0.7 | 0.268775 |
Target: 5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3' miRNA: 3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 25492 | 0.7 | 0.26612 |
Target: 5'- -aCGCUGCUGGACGGcgccgugcccuACGAaaucgccaaucccuaCGCCGAa -3' miRNA: 3'- ggGCGGCGACCUGCU-----------UGCU---------------GCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 16808 | 0.7 | 0.256993 |
Target: 5'- aCgCGCUGCUGG-CGAccGCGcCGCCGuGg -3' miRNA: 3'- -GgGCGGCGACCuGCU--UGCuGCGGCuC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 40360 | 0.71 | 0.244402 |
Target: 5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3' miRNA: 3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 16723 | 0.71 | 0.215161 |
Target: 5'- cCCCGCCGCgGGGCuGGuaugagcaGCGuuGCCGAa -3' miRNA: 3'- -GGGCGGCGaCCUG-CU--------UGCugCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 37633 | 0.74 | 0.132192 |
Target: 5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3' miRNA: 3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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