Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26597 | 3' | -59.5 | NC_005357.1 | + | 31958 | 0.66 | 0.459433 |
Target: 5'- gCCGgUGCUGcGCGAcuuccaggGCGACGCCaAGg -3' miRNA: 3'- gGGCgGCGACcUGCU--------UGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 37553 | 0.66 | 0.469169 |
Target: 5'- gCCGCCgucgccgcGCUGGGC-AACGACcugaCCGGGc -3' miRNA: 3'- gGGCGG--------CGACCUGcUUGCUGc---GGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 4041 | 0.66 | 0.479009 |
Target: 5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3' miRNA: 3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 14536 | 0.72 | 0.193974 |
Target: 5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3' miRNA: 3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13390 | 0.67 | 0.394505 |
Target: 5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3' miRNA: 3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 41339 | 0.66 | 0.48895 |
Target: 5'- aCCGCCGCcaacAUGAaguACGcGCGCCGGGu -3' miRNA: 3'- gGGCGGCGacc-UGCU---UGC-UGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 32853 | 0.74 | 0.133633 |
Target: 5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3' miRNA: 3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 36264 | 0.66 | 0.469169 |
Target: 5'- aCCgGCCugcGCUGGGaagauGACGGCGgCGAGu -3' miRNA: 3'- -GGgCGG---CGACCUgc---UUGCUGCgGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 24675 | 0.66 | 0.459433 |
Target: 5'- gCCCGCCGC-GGGCc-ACGuccACGCCcAGg -3' miRNA: 3'- -GGGCGGCGaCCUGcuUGC---UGCGGcUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 1302 | 0.71 | 0.232327 |
Target: 5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3' miRNA: 3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 34885 | 0.7 | 0.256993 |
Target: 5'- -gCGCCGC-GGAuCGAgcACGcCGCCGAGc -3' miRNA: 3'- ggGCGGCGaCCU-GCU--UGCuGCGGCUC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11148 | 0.66 | 0.449805 |
Target: 5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3' miRNA: 3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11928 | 0.66 | 0.447893 |
Target: 5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3' miRNA: 3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 13500 | 0.66 | 0.44029 |
Target: 5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3' miRNA: 3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 25761 | 0.69 | 0.297954 |
Target: 5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3' miRNA: 3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 40121 | 0.69 | 0.312689 |
Target: 5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3' miRNA: 3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 11841 | 0.69 | 0.327971 |
Target: 5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3' miRNA: 3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 15916 | 0.68 | 0.363506 |
Target: 5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3' miRNA: 3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 30369 | 0.68 | 0.376215 |
Target: 5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3' miRNA: 3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5' |
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26597 | 3' | -59.5 | NC_005357.1 | + | 24442 | 0.66 | 0.44029 |
Target: 5'- gCCGCgCGCggccucGGCGAcauUGACGCCGAc -3' miRNA: 3'- gGGCG-GCGac----CUGCUu--GCUGCGGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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