miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 3' -59.5 NC_005357.1 + 8994 0.67 0.41245
Target:  5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3'
miRNA:   3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5'
26597 3' -59.5 NC_005357.1 + 28281 0.67 0.41245
Target:  5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3'
miRNA:   3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5'
26597 3' -59.5 NC_005357.1 + 4035 0.67 0.41245
Target:  5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3'
miRNA:   3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 13557 0.67 0.403414
Target:  5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3'
miRNA:   3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 18432 0.67 0.403414
Target:  5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3'
miRNA:   3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 20989 0.67 0.403414
Target:  5'- cCCCGCCGCaGGAaaugcaGGGCGuugaccugaACGUgGAGu -3'
miRNA:   3'- -GGGCGGCGaCCUg-----CUUGC---------UGCGgCUC- -5'
26597 3' -59.5 NC_005357.1 + 13390 0.67 0.394505
Target:  5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3'
miRNA:   3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 33202 0.67 0.389221
Target:  5'- aCUGCCGCcGGGCGcgccgcagaacgugcGccGCGcCGCCGAGc -3'
miRNA:   3'- gGGCGGCGaCCUGC---------------U--UGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 10381 0.67 0.385724
Target:  5'- gUCGCauaGUUGuGCGAGCG-CGCCGGGu -3'
miRNA:   3'- gGGCGg--CGACcUGCUUGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 30369 0.68 0.376215
Target:  5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3'
miRNA:   3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 15916 0.68 0.363506
Target:  5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3'
miRNA:   3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 31146 0.68 0.360168
Target:  5'- uUCCGCCuacCUGGcCGAGCGucccaGCGCCGcAGc -3'
miRNA:   3'- -GGGCGGc--GACCuGCUUGC-----UGCGGC-UC- -5'
26597 3' -59.5 NC_005357.1 + 17442 0.68 0.343798
Target:  5'- gCCC-CCuuuguGCUGGugGGugGGCGCguCGAGu -3'
miRNA:   3'- -GGGcGG-----CGACCugCUugCUGCG--GCUC- -5'
26597 3' -59.5 NC_005357.1 + 11193 0.68 0.343798
Target:  5'- gCUCGuaGCUGGGCc-GCG-CGCCGGGg -3'
miRNA:   3'- -GGGCggCGACCUGcuUGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 14207 0.68 0.343798
Target:  5'- aCCCG-CGCgUGGuCGucgGCGugGCCGAc -3'
miRNA:   3'- -GGGCgGCG-ACCuGCu--UGCugCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 21830 0.68 0.343798
Target:  5'- -aCGCCGcCUGG-CGAAgGAUaCCGAGg -3'
miRNA:   3'- ggGCGGC-GACCuGCUUgCUGcGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 31789 0.68 0.335817
Target:  5'- -aCGCCGCaGG-UGAAUGACGCCu-- -3'
miRNA:   3'- ggGCGGCGaCCuGCUUGCUGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 23151 0.68 0.335817
Target:  5'- aCCaCGCUGUUcuacGGCGAuuccagcauCGACGCCGAGa -3'
miRNA:   3'- -GG-GCGGCGAc---CUGCUu--------GCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 11841 0.69 0.327971
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 2745 0.69 0.320262
Target:  5'- gCCCGgCGCUGcuCGGGCG-UGCCGAc -3'
miRNA:   3'- -GGGCgGCGACcuGCUUGCuGCGGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.