miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 5' -54.5 NC_005357.1 + 13873 0.66 0.635967
Target:  5'- gCGCgccgCGAuGGCCG-GCGgccgCAAGGUCg -3'
miRNA:   3'- -GCGa---GUU-CCGGUaCGCaga-GUUCCAG- -5'
26597 5' -54.5 NC_005357.1 + 38034 0.66 0.635967
Target:  5'- aCGCUCAAGGCCcgGCG-Cgac-GG-Cg -3'
miRNA:   3'- -GCGAGUUCCGGuaCGCaGaguuCCaG- -5'
26597 5' -54.5 NC_005357.1 + 35381 0.67 0.601845
Target:  5'- cCGCcCGAGGCCAUGCGccugCUgCAacAGG-Cg -3'
miRNA:   3'- -GCGaGUUCCGGUACGCa---GA-GU--UCCaG- -5'
26597 5' -54.5 NC_005357.1 + 29564 0.67 0.601845
Target:  5'- uGCUCGGGGUaucGCGUC---AGGUCg -3'
miRNA:   3'- gCGAGUUCCGguaCGCAGaguUCCAG- -5'
26597 5' -54.5 NC_005357.1 + 29060 0.68 0.555663
Target:  5'- gGCUCGuAGGCCAUcaGCGggUCAuccucgggcgccgAGGUCa -3'
miRNA:   3'- gCGAGU-UCCGGUA--CGCagAGU-------------UCCAG- -5'
26597 5' -54.5 NC_005357.1 + 2588 0.68 0.523621
Target:  5'- aGCUugCAAGGCCA-GCagGUUggCGAGGUCg -3'
miRNA:   3'- gCGA--GUUCCGGUaCG--CAGa-GUUCCAG- -5'
26597 5' -54.5 NC_005357.1 + 8621 0.68 0.501939
Target:  5'- gCGCuUCucGGCCGcUGCGguggCGAGGUCg -3'
miRNA:   3'- -GCG-AGuuCCGGU-ACGCaga-GUUCCAG- -5'
26597 5' -54.5 NC_005357.1 + 15732 0.69 0.459831
Target:  5'- gGCgCGAGGCCAUGCG-CUCGAc--- -3'
miRNA:   3'- gCGaGUUCCGGUACGCaGAGUUccag -5'
26597 5' -54.5 NC_005357.1 + 32318 0.7 0.418696
Target:  5'- cCGCcaUCAAGGCCG-GCGUCcCGacaaccgccgcccAGGUCg -3'
miRNA:   3'- -GCG--AGUUCCGGUaCGCAGaGU-------------UCCAG- -5'
26597 5' -54.5 NC_005357.1 + 31900 0.71 0.363611
Target:  5'- cCGCcaUCGAGGCCGagugccugcgGCGUUUCGAGGcCu -3'
miRNA:   3'- -GCG--AGUUCCGGUa---------CGCAGAGUUCCaG- -5'
26597 5' -54.5 NC_005357.1 + 4637 0.73 0.27497
Target:  5'- uGCU--GGGCCAcgcUGCGUCggccaucgcgUCAAGGUCg -3'
miRNA:   3'- gCGAguUCCGGU---ACGCAG----------AGUUCCAG- -5'
26597 5' -54.5 NC_005357.1 + 35097 1.11 0.000582
Target:  5'- gCGCUCAAGGCCAUGCGUCUCAAGGUCg -3'
miRNA:   3'- -GCGAGUUCCGGUACGCAGAGUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.