Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26598 | 5' | -56.4 | NC_005357.1 | + | 32367 | 0.66 | 0.597071 |
Target: 5'- cGCCGcCGAGGccccGGCCGCCcAGCaGGa -3' miRNA: 3'- -CGGUaGCUCUu---UCGGUGGcUCGcCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 18277 | 0.66 | 0.586009 |
Target: 5'- aGCCGUCGAGGcgcuGGGCCaggcgcgcaGCCG-GCuGGa -3' miRNA: 3'- -CGGUAGCUCU----UUCGG---------UGGCuCGcCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 36956 | 0.66 | 0.583801 |
Target: 5'- cCCAUCGGcaacaccucGCCGCCcGGCGGGa -3' miRNA: 3'- cGGUAGCUcuuu-----CGGUGGcUCGCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 4036 | 0.67 | 0.542238 |
Target: 5'- uGCCGcgCGGGucGAGCgcaGCCGGGCGGa- -3' miRNA: 3'- -CGGUa-GCUCu-UUCGg--UGGCUCGCCca -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 36817 | 0.67 | 0.489175 |
Target: 5'- cGCCAcgCGcGAAAcgcaccCCGCCGAGUGGGc -3' miRNA: 3'- -CGGUa-GCuCUUUc-----GGUGGCUCGCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 25353 | 0.68 | 0.468629 |
Target: 5'- gGCCAguUCGcauAGccGGCCACCGGGCaGGc -3' miRNA: 3'- -CGGU--AGC---UCuuUCGGUGGCUCGcCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 28565 | 0.68 | 0.448535 |
Target: 5'- gGCCAUCGcGGcgcgcacgucGGCCACCGgcAGCGuGGUg -3' miRNA: 3'- -CGGUAGCuCUu---------UCGGUGGC--UCGC-CCA- -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 13054 | 0.68 | 0.448535 |
Target: 5'- cGCCGagucCGAGGgcuggggcaAGGCCACCGGcGCGuGGUu -3' miRNA: 3'- -CGGUa---GCUCU---------UUCGGUGGCU-CGC-CCA- -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 11522 | 0.68 | 0.428926 |
Target: 5'- cGCUggCGuGAGGcCCugCGAGCGGGc -3' miRNA: 3'- -CGGuaGCuCUUUcGGugGCUCGCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 14106 | 0.69 | 0.409833 |
Target: 5'- gGCCAUCGAGuccgaCGCCGAGCGc-- -3' miRNA: 3'- -CGGUAGCUCuuucgGUGGCUCGCcca -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 7208 | 0.69 | 0.408892 |
Target: 5'- uGCCAUCGGacugcgugauGAAgcccugcaacuucGGCCACUGGcGCGGGc -3' miRNA: 3'- -CGGUAGCU----------CUU-------------UCGGUGGCU-CGCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 31046 | 0.69 | 0.400486 |
Target: 5'- cCCAUC-AGGucGCCACCGAGgugcCGGGc -3' miRNA: 3'- cGGUAGcUCUuuCGGUGGCUC----GCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 14991 | 0.7 | 0.364491 |
Target: 5'- cGCCA--GGGccugcGGCCGCCGGGCGcGGUg -3' miRNA: 3'- -CGGUagCUCuu---UCGGUGGCUCGC-CCA- -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 33520 | 0.7 | 0.347352 |
Target: 5'- aGCCAUCGAGcgcGCCGCCGAuaGCGc-- -3' miRNA: 3'- -CGGUAGCUCuuuCGGUGGCU--CGCcca -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 34993 | 0.71 | 0.32274 |
Target: 5'- cGCgCGUCGAGGAAGUguCCGGGCGc-- -3' miRNA: 3'- -CG-GUAGCUCUUUCGguGGCUCGCcca -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 37373 | 0.71 | 0.289772 |
Target: 5'- uGCCG-CGgccugugcucaagcAGGAcGCCAUCGAGCGGGg -3' miRNA: 3'- -CGGUaGC--------------UCUUuCGGUGGCUCGCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 4436 | 0.73 | 0.219295 |
Target: 5'- cGCCAg-GGGGAAGCCGCC-AGCGGuGg -3' miRNA: 3'- -CGGUagCUCUUUCGGUGGcUCGCC-Ca -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 35664 | 0.73 | 0.219295 |
Target: 5'- gGCCAUCGAGcAGGUCGCCaaggaaaAGUGGGg -3' miRNA: 3'- -CGGUAGCUCuUUCGGUGGc------UCGCCCa -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 34886 | 0.73 | 0.213515 |
Target: 5'- cGCCGcggaUCGAGcacGCCGCCGAGCGcacGGUa -3' miRNA: 3'- -CGGU----AGCUCuuuCGGUGGCUCGC---CCA- -5' |
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26598 | 5' | -56.4 | NC_005357.1 | + | 35458 | 1.09 | 0.000584 |
Target: 5'- aGCCAUCGAGAAAGCCACCGAGCGGGUc -3' miRNA: 3'- -CGGUAGCUCUUUCGGUGGCUCGCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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