miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26598 5' -56.4 NC_005357.1 + 32367 0.66 0.597071
Target:  5'- cGCCGcCGAGGccccGGCCGCCcAGCaGGa -3'
miRNA:   3'- -CGGUaGCUCUu---UCGGUGGcUCGcCCa -5'
26598 5' -56.4 NC_005357.1 + 18277 0.66 0.586009
Target:  5'- aGCCGUCGAGGcgcuGGGCCaggcgcgcaGCCG-GCuGGa -3'
miRNA:   3'- -CGGUAGCUCU----UUCGG---------UGGCuCGcCCa -5'
26598 5' -56.4 NC_005357.1 + 36956 0.66 0.583801
Target:  5'- cCCAUCGGcaacaccucGCCGCCcGGCGGGa -3'
miRNA:   3'- cGGUAGCUcuuu-----CGGUGGcUCGCCCa -5'
26598 5' -56.4 NC_005357.1 + 4036 0.67 0.542238
Target:  5'- uGCCGcgCGGGucGAGCgcaGCCGGGCGGa- -3'
miRNA:   3'- -CGGUa-GCUCu-UUCGg--UGGCUCGCCca -5'
26598 5' -56.4 NC_005357.1 + 36817 0.67 0.489175
Target:  5'- cGCCAcgCGcGAAAcgcaccCCGCCGAGUGGGc -3'
miRNA:   3'- -CGGUa-GCuCUUUc-----GGUGGCUCGCCCa -5'
26598 5' -56.4 NC_005357.1 + 25353 0.68 0.468629
Target:  5'- gGCCAguUCGcauAGccGGCCACCGGGCaGGc -3'
miRNA:   3'- -CGGU--AGC---UCuuUCGGUGGCUCGcCCa -5'
26598 5' -56.4 NC_005357.1 + 28565 0.68 0.448535
Target:  5'- gGCCAUCGcGGcgcgcacgucGGCCACCGgcAGCGuGGUg -3'
miRNA:   3'- -CGGUAGCuCUu---------UCGGUGGC--UCGC-CCA- -5'
26598 5' -56.4 NC_005357.1 + 13054 0.68 0.448535
Target:  5'- cGCCGagucCGAGGgcuggggcaAGGCCACCGGcGCGuGGUu -3'
miRNA:   3'- -CGGUa---GCUCU---------UUCGGUGGCU-CGC-CCA- -5'
26598 5' -56.4 NC_005357.1 + 11522 0.68 0.428926
Target:  5'- cGCUggCGuGAGGcCCugCGAGCGGGc -3'
miRNA:   3'- -CGGuaGCuCUUUcGGugGCUCGCCCa -5'
26598 5' -56.4 NC_005357.1 + 14106 0.69 0.409833
Target:  5'- gGCCAUCGAGuccgaCGCCGAGCGc-- -3'
miRNA:   3'- -CGGUAGCUCuuucgGUGGCUCGCcca -5'
26598 5' -56.4 NC_005357.1 + 7208 0.69 0.408892
Target:  5'- uGCCAUCGGacugcgugauGAAgcccugcaacuucGGCCACUGGcGCGGGc -3'
miRNA:   3'- -CGGUAGCU----------CUU-------------UCGGUGGCU-CGCCCa -5'
26598 5' -56.4 NC_005357.1 + 31046 0.69 0.400486
Target:  5'- cCCAUC-AGGucGCCACCGAGgugcCGGGc -3'
miRNA:   3'- cGGUAGcUCUuuCGGUGGCUC----GCCCa -5'
26598 5' -56.4 NC_005357.1 + 14991 0.7 0.364491
Target:  5'- cGCCA--GGGccugcGGCCGCCGGGCGcGGUg -3'
miRNA:   3'- -CGGUagCUCuu---UCGGUGGCUCGC-CCA- -5'
26598 5' -56.4 NC_005357.1 + 33520 0.7 0.347352
Target:  5'- aGCCAUCGAGcgcGCCGCCGAuaGCGc-- -3'
miRNA:   3'- -CGGUAGCUCuuuCGGUGGCU--CGCcca -5'
26598 5' -56.4 NC_005357.1 + 34993 0.71 0.32274
Target:  5'- cGCgCGUCGAGGAAGUguCCGGGCGc-- -3'
miRNA:   3'- -CG-GUAGCUCUUUCGguGGCUCGCcca -5'
26598 5' -56.4 NC_005357.1 + 37373 0.71 0.289772
Target:  5'- uGCCG-CGgccugugcucaagcAGGAcGCCAUCGAGCGGGg -3'
miRNA:   3'- -CGGUaGC--------------UCUUuCGGUGGCUCGCCCa -5'
26598 5' -56.4 NC_005357.1 + 4436 0.73 0.219295
Target:  5'- cGCCAg-GGGGAAGCCGCC-AGCGGuGg -3'
miRNA:   3'- -CGGUagCUCUUUCGGUGGcUCGCC-Ca -5'
26598 5' -56.4 NC_005357.1 + 35664 0.73 0.219295
Target:  5'- gGCCAUCGAGcAGGUCGCCaaggaaaAGUGGGg -3'
miRNA:   3'- -CGGUAGCUCuUUCGGUGGc------UCGCCCa -5'
26598 5' -56.4 NC_005357.1 + 34886 0.73 0.213515
Target:  5'- cGCCGcggaUCGAGcacGCCGCCGAGCGcacGGUa -3'
miRNA:   3'- -CGGU----AGCUCuuuCGGUGGCUCGC---CCA- -5'
26598 5' -56.4 NC_005357.1 + 35458 1.09 0.000584
Target:  5'- aGCCAUCGAGAAAGCCACCGAGCGGGUc -3'
miRNA:   3'- -CGGUAGCUCUUUCGGUGGCUCGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.