Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26599 | 5' | -54.8 | NC_005357.1 | + | 39648 | 0.68 | 0.506695 |
Target: 5'- -gGGCGcaccUGCGCAAcGUCGAGGUGUc- -3' miRNA: 3'- ggUCGCu---ACGCGUU-CAGUUCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 5283 | 0.69 | 0.485445 |
Target: 5'- uCCAGCGucgauUGCugcaugucugGCAGGUCGAGGcCGUa- -3' miRNA: 3'- -GGUCGCu----ACG----------CGUUCAGUUCC-GCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 7796 | 0.69 | 0.47394 |
Target: 5'- -aGGCGAUGggcaugucccacuCGCugauauGGUCGAGGCGCg- -3' miRNA: 3'- ggUCGCUAC-------------GCGu-----UCAGUUCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 30632 | 0.69 | 0.464629 |
Target: 5'- aCCAGCcg-GCGCGAaUgAGGGCGCa- -3' miRNA: 3'- -GGUCGcuaCGCGUUcAgUUCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 6342 | 0.69 | 0.454397 |
Target: 5'- cCCAGCcaaaGCGCccggcccgaAGGcCGGGGCGCUGg -3' miRNA: 3'- -GGUCGcua-CGCG---------UUCaGUUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 38817 | 0.69 | 0.45338 |
Target: 5'- gCCAGCGAagcaaaaUGCGCG-GUCAAGGUu--- -3' miRNA: 3'- -GGUCGCU-------ACGCGUuCAGUUCCGcgac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 6619 | 0.69 | 0.444288 |
Target: 5'- aCCAGCGG-GCGCGu-----GGCGCUGc -3' miRNA: 3'- -GGUCGCUaCGCGUucaguuCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 11483 | 0.7 | 0.424456 |
Target: 5'- gCCAGCu-UGCGUAGcGUUuccccacuGGGGCGCUGa -3' miRNA: 3'- -GGUCGcuACGCGUU-CAG--------UUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 24182 | 0.7 | 0.405162 |
Target: 5'- uUCGGCGuguccaugaGCGCGAG-CAcguAGGCGCUGc -3' miRNA: 3'- -GGUCGCua-------CGCGUUCaGU---UCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 28755 | 0.71 | 0.36828 |
Target: 5'- uCCAGCGcgGUGCGcuUCucGGCGCg- -3' miRNA: 3'- -GGUCGCuaCGCGUucAGuuCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 26193 | 0.72 | 0.308691 |
Target: 5'- -uGGCGAUggcuucgGUGUAGGUCGAGGCGUUu -3' miRNA: 3'- ggUCGCUA-------CGCGUUCAGUUCCGCGAc -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 28682 | 0.72 | 0.304007 |
Target: 5'- gCCAGCGcgGCGCGccacgucguucacaaGGUCGAugcugucGGCGCa- -3' miRNA: 3'- -GGUCGCuaCGCGU---------------UCAGUU-------CCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 11422 | 0.73 | 0.286557 |
Target: 5'- gCGGCGAgccggcGUGCAGGUCGccgauaAGGCGCg- -3' miRNA: 3'- gGUCGCUa-----CGCGUUCAGU------UCCGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 27439 | 0.73 | 0.27922 |
Target: 5'- cCCGGCGGc-CGCAGGcCcuGGCGCUGg -3' miRNA: 3'- -GGUCGCUacGCGUUCaGuuCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 8311 | 0.73 | 0.272033 |
Target: 5'- gCCAGCGGUGCGCGcugcUCGGGGaaaGUUGc -3' miRNA: 3'- -GGUCGCUACGCGUuc--AGUUCCg--CGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 18263 | 0.73 | 0.264996 |
Target: 5'- aCGcCGAagcGCGCAGccGUCGAGGCGCUGg -3' miRNA: 3'- gGUcGCUa--CGCGUU--CAGUUCCGCGAC- -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 4026 | 0.73 | 0.258107 |
Target: 5'- aCCAGCGucaugccGCGCGGGUCGAG-CGCa- -3' miRNA: 3'- -GGUCGCua-----CGCGUUCAGUUCcGCGac -5' |
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26599 | 5' | -54.8 | NC_005357.1 | + | 35632 | 1.11 | 0.000544 |
Target: 5'- cCCAGCGAUGCGCAAGUCAAGGCGCUGa -3' miRNA: 3'- -GGUCGCUACGCGUUCAGUUCCGCGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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