miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
266 3' -57.9 AC_000008.1 + 24787 0.66 0.443753
Target:  5'- gUGCCCUgcaugUCUGCCGcUGCUcuugcucuuGCCGCu -3'
miRNA:   3'- -AUGGGGaua--GGACGGC-ACGGu--------UGGCG- -5'
266 3' -57.9 AC_000008.1 + 14243 0.66 0.443753
Target:  5'- -uCCCCUGgaCCcGCCGUuuguGCCu-CCGCg -3'
miRNA:   3'- auGGGGAUa-GGaCGGCA----CGGuuGGCG- -5'
266 3' -57.9 AC_000008.1 + 33700 0.67 0.392706
Target:  5'- gGCUCUgcUCCUGCCGccGCCGccuggcuuccuccuGCUGCu -3'
miRNA:   3'- aUGGGGauAGGACGGCa-CGGU--------------UGGCG- -5'
266 3' -57.9 AC_000008.1 + 1401 0.67 0.389932
Target:  5'- aUACaCCCggugGUCCcGCUGUGCCccauuaaaccaguuGCCGUg -3'
miRNA:   3'- -AUG-GGGa---UAGGaCGGCACGGu-------------UGGCG- -5'
266 3' -57.9 AC_000008.1 + 16751 0.68 0.333891
Target:  5'- gGCCCCUGUCCagcacGCCGcggaUGUCAAaguaCGUg -3'
miRNA:   3'- aUGGGGAUAGGa----CGGC----ACGGUUg---GCG- -5'
266 3' -57.9 AC_000008.1 + 24724 0.68 0.333891
Target:  5'- cACCaUCUG--CUGCCGcGUCAACCGCg -3'
miRNA:   3'- aUGG-GGAUagGACGGCaCGGUUGGCG- -5'
266 3' -57.9 AC_000008.1 + 28046 0.68 0.333891
Target:  5'- aGCCUCUAgugaCUGCCGcGCgagaccUAGCCGCg -3'
miRNA:   3'- aUGGGGAUag--GACGGCaCG------GUUGGCG- -5'
266 3' -57.9 AC_000008.1 + 24187 0.68 0.331414
Target:  5'- aUGCCUCguUGUcCCUGCUGUGCugcacuauaaggaaCAGCUGCg -3'
miRNA:   3'- -AUGGGG--AUA-GGACGGCACG--------------GUUGGCG- -5'
266 3' -57.9 AC_000008.1 + 23793 0.7 0.24531
Target:  5'- gGCCUCUcuAUCgccgCUGcCCGUGCCAGCCa- -3'
miRNA:   3'- aUGGGGA--UAG----GAC-GGCACGGUUGGcg -5'
266 3' -57.9 AC_000008.1 + 24507 0.71 0.208833
Target:  5'- cUACCCCguaUUUGCCGUGCCAGaggUGCu -3'
miRNA:   3'- -AUGGGGauaGGACGGCACGGUUg--GCG- -5'
266 3' -57.9 AC_000008.1 + 9174 0.71 0.192412
Target:  5'- cGCUgCUGUUgCUGCCGcUGCCGcuGCCGCc -3'
miRNA:   3'- aUGGgGAUAG-GACGGC-ACGGU--UGGCG- -5'
266 3' -57.9 AC_000008.1 + 9087 0.74 0.122766
Target:  5'- cGCUCCUccUCCUGCUGcUGCC-GCCGCu -3'
miRNA:   3'- aUGGGGAu-AGGACGGC-ACGGuUGGCG- -5'
266 3' -57.9 AC_000008.1 + 10674 0.74 0.118274
Target:  5'- aGCCCCgUAUCCgGCCGUccGCCGugauccaugcgguuACCGCc -3'
miRNA:   3'- aUGGGG-AUAGGaCGGCA--CGGU--------------UGGCG- -5'
266 3' -57.9 AC_000008.1 + 24571 1.1 0.000212
Target:  5'- aUACCCCUAUCCUGCCGUGCCAACCGCa -3'
miRNA:   3'- -AUGGGGAUAGGACGGCACGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.