Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
266 | 3' | -57.9 | AC_000008.1 | + | 33700 | 0.67 | 0.392706 |
Target: 5'- gGCUCUgcUCCUGCCGccGCCGccuggcuuccuccuGCUGCu -3' miRNA: 3'- aUGGGGauAGGACGGCa-CGGU--------------UGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 28046 | 0.68 | 0.333891 |
Target: 5'- aGCCUCUAgugaCUGCCGcGCgagaccUAGCCGCg -3' miRNA: 3'- aUGGGGAUag--GACGGCaCG------GUUGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 24787 | 0.66 | 0.443753 |
Target: 5'- gUGCCCUgcaugUCUGCCGcUGCUcuugcucuuGCCGCu -3' miRNA: 3'- -AUGGGGaua--GGACGGC-ACGGu--------UGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 24724 | 0.68 | 0.333891 |
Target: 5'- cACCaUCUG--CUGCCGcGUCAACCGCg -3' miRNA: 3'- aUGG-GGAUagGACGGCaCGGUUGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 24571 | 1.1 | 0.000212 |
Target: 5'- aUACCCCUAUCCUGCCGUGCCAACCGCa -3' miRNA: 3'- -AUGGGGAUAGGACGGCACGGUUGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 24507 | 0.71 | 0.208833 |
Target: 5'- cUACCCCguaUUUGCCGUGCCAGaggUGCu -3' miRNA: 3'- -AUGGGGauaGGACGGCACGGUUg--GCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 24187 | 0.68 | 0.331414 |
Target: 5'- aUGCCUCguUGUcCCUGCUGUGCugcacuauaaggaaCAGCUGCg -3' miRNA: 3'- -AUGGGG--AUA-GGACGGCACG--------------GUUGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 23793 | 0.7 | 0.24531 |
Target: 5'- gGCCUCUcuAUCgccgCUGcCCGUGCCAGCCa- -3' miRNA: 3'- aUGGGGA--UAG----GAC-GGCACGGUUGGcg -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 16751 | 0.68 | 0.333891 |
Target: 5'- gGCCCCUGUCCagcacGCCGcggaUGUCAAaguaCGUg -3' miRNA: 3'- aUGGGGAUAGGa----CGGC----ACGGUUg---GCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 14243 | 0.66 | 0.443753 |
Target: 5'- -uCCCCUGgaCCcGCCGUuuguGCCu-CCGCg -3' miRNA: 3'- auGGGGAUa-GGaCGGCA----CGGuuGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 10674 | 0.74 | 0.118274 |
Target: 5'- aGCCCCgUAUCCgGCCGUccGCCGugauccaugcgguuACCGCc -3' miRNA: 3'- aUGGGG-AUAGGaCGGCA--CGGU--------------UGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 9174 | 0.71 | 0.192412 |
Target: 5'- cGCUgCUGUUgCUGCCGcUGCCGcuGCCGCc -3' miRNA: 3'- aUGGgGAUAG-GACGGC-ACGGU--UGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 9087 | 0.74 | 0.122766 |
Target: 5'- cGCUCCUccUCCUGCUGcUGCC-GCCGCu -3' miRNA: 3'- aUGGGGAu-AGGACGGC-ACGGuUGGCG- -5' |
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266 | 3' | -57.9 | AC_000008.1 | + | 1401 | 0.67 | 0.389932 |
Target: 5'- aUACaCCCggugGUCCcGCUGUGCCccauuaaaccaguuGCCGUg -3' miRNA: 3'- -AUG-GGGa---UAGGaCGGCACGGu-------------UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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